DefaultDimReduc: Find the default 'DimReduc'
In SeuratObject: Data Structures for Single Cell Data
DefaultDimReduc R Documentation
Find the default DimReduc
Description
Searches for DimReducs matching “umap”, “tsne”,
or “pca”, case-insensitive, and in that order. Priority given to
DimReducs matching the DefaultAssay or assay specified
(eg. “pca” for the default assay weights higher than “umap”
for a non-default assay)
Usage
DefaultDimReduc(object, assay = NULL)
Arguments
object
A Seurat object
assay
Name of assay to use; defaults to the default assay of the object
Value
The default DimReduc, if possible
Examples
DefaultDimReduc(pbmc_small)
SeuratObject documentation built on Nov. 18, 2023, 1:06 a.m.
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| DefaultDimReduc | R Documentation |
Find the default DimReduc
Description
Searches for DimReducs matching “umap”, “tsne”,
or “pca”, case-insensitive, and in that order. Priority given to
DimReducs matching the DefaultAssay or assay specified
(eg. “pca” for the default assay weights higher than “umap”
for a non-default assay)
Usage
DefaultDimReduc(object, assay = NULL)
Arguments
object |
A |
assay |
Name of assay to use; defaults to the default assay of the object |
Value
The default DimReduc, if possible
Examples
DefaultDimReduc(pbmc_small)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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