Files in SeuratObject
Data Structures for Single Cell Data
MD5
NEWS.md
NAMESPACE
DESCRIPTION
LICENSE
R/RcppExports.R
R/logmap.R
R/sparse.R
R/layers.R
R/centroids.R
R/command.R
R/default.R
R/data.R
R/compliance.R
R/jackstraw.R
R/dimreduc.R
R/fov.R
R/neighbor.R
R/molecules.R
R/segmentation.R
R/generics.R
R/assay5.R
R/seurat.R
R/zzz.R
R/assay.R
R/keymixin.R
R/graph.R
R/spatial.R
R/utils.R
src/RcppExports.cpp
src/data_manipulation.h
src/valid_pointer.c
src/data_manipulation.cpp
build/SeuratObject.pdf
build/partial.rdb
data/pbmc_small.rda
man/as.Graph.Rd
man/sub-sub-.StdAssay.Rd
man/dot-IsFutureSeurat.Rd
man/dot-FilterObjects.Rd
man/Boundaries.Rd
man/split.Seurat.Rd
man/CheckMatrix.Rd
man/dim.Seurat.Rd
man/set-if-null.Rd
man/Loadings.Rd
man/SplitLayers.Rd
man/Neighbor-class.Rd
man/dot-CalcN.Rd
man/print.DimReduc.Rd
man/cash-.StdAssay.Rd
man/DimReduc-class.Rd
man/dot-CreateStdAssay.Rd
man/Project.Rd
man/merge.StdAssay.Rd
man/dot-DollarNames.StdAssay.Rd
man/sub-subset-Seurat-NULL.Rd
man/dot-Collections.Rd
man/reexports.Rd
man/show-DimReduc-method.Rd
man/DefaultLayer.Rd
man/CastAssay.Rd
man/UpdateSeuratObject.Rd
man/dimnames.StdAssay.Rd
man/Embeddings.Rd
man/MatchCells.Rd
man/AttachDeps.Rd
man/dim.Assay5.Rd
man/VariableFeatures-StdAssay.Rd
man/FOV-validity.Rd
man/Distances.Rd
man/Cells.Rd
man/CreateAssay5Object.Rd
man/GetTissueCoordinates.Rd
man/NNIndex.Rd
man/AssayData.Rd
man/RowMergeSparseMatrices.Rd
man/sub-subset-Seurat.Rd
man/StdAssay-class.Rd
man/v5-assay-summaries.Rd
man/show-LogMap-method.Rd
man/colMeans-Assay-method.Rd
man/Assay-class.Rd
man/set-if-na.Rd
man/Radius.Rd
man/sub-.Assay5.Rd
man/sub-subset-Seurat-character-missing-StdAssay-method.Rd
man/Key.Rd
man/dim.Assay.Rd
man/dot-FilePath.Rd
man/CheckDots.Rd
man/VariableFeatures.Rd
man/SpatialImage-class.Rd
man/SeuratObject-package.Rd
man/Tool.Rd
man/dot-AssayClass.Rd
man/droplevels.LogMap.Rd
man/EmptyDF.Rd
man/ClassKey.Rd
man/oldseurat-class.Rd
man/split.Assay5.Rd
man/dot-Subobjects.Rd
man/CheckFeaturesNames.Rd
man/KeyMixin-class.Rd
man/IsMatrixEmpty.Rd
man/CheckLayersName.Rd
man/ExtractField.Rd
man/as.matrix.LogMap.Rd
man/CellsByImage.Rd
man/SpatialImage-methods.Rd
man/Misc.Rd
man/StitchMatrix.Rd
man/old-assign.Rd
man/RenameCells.Rd
man/CreateSegmentation.Rd
man/dimnames.Seurat.Rd
man/dot-BPMatrixMode.Rd
man/DefaultAssay.Rd
man/Overlay.Rd
man/PolyVtx.Rd
man/SeuratCommand-class.Rd
man/AddMetaData-StdAssay.Rd
man/names.Seurat.Rd
man/colMeans-Seurat-method.Rd
man/split.StdAssay.Rd
man/JackStrawData-methods.Rd
man/UpdateSlots.Rd
man/Centroids-class.Rd
man/dot-Contains.Rd
man/as.Neighbor.Rd
man/Segmentation-class.Rd
man/Molecules-methods.Rd
man/dot-DollarNames.SeuratCommand.Rd
man/sub-sub-.Assay5.Rd
man/show-Graph-method.Rd
man/DefaultDimReduc.Rd
man/Assay-validity.Rd
man/dot-FileMove.Rd
man/IsGlobal.Rd
man/pbmc_small.Rd
man/as.list.SeuratCommand.Rd
man/dim.StdAssay.Rd
man/RenameCells-StdAssay.Rd
man/show-oldseurat-method.Rd
man/Crop.Rd
man/dot-GetMethod.Rd
man/Command.Rd
man/FOV-methods.Rd
man/Centroids-methods.Rd
man/IsSparse.Rd
man/show-Assay-method.Rd
man/CastAssay-StdAssay.Rd
man/JackStrawData-class.Rd
man/CellsByIdentities.Rd
man/WhichCells.Rd
man/sub-sub-.DimReduc.Rd
man/Images.Rd
man/AddMetaData.Rd
man/cash-.Seurat.Rd
man/CreateCentroids.Rd
man/Idents.Rd
man/Indices.Rd
man/SparseEmptyMatrix.Rd
man/dimnames.Assay.Rd
man/Key-validity.Rd
man/dot-KeyPattern.Rd
man/sub-sub-LogMap-internal-method.Rd
man/Simplify.Rd
man/merge.Assay5.Rd
man/dot-SelectFeatures.Rd
man/RegisterSparseMatrix.Rd
man/FOV-class.Rd
man/subset.DimReduc.Rd
man/StdAssay-validity.Rd
man/Neighbor-methods.Rd
man/PackageCheck.Rd
man/ObjectAccess.Rd
man/as.Seurat.Rd
man/FilterObjects.Rd
man/dot-DollarNames.Seurat.Rd
man/subset.StdAssay.Rd
man/Segmentation-methods.Rd
man/LogMap-validity.Rd
man/DefaultFOV.Rd
man/sub-.StdAssay.Rd
man/Assay5-validity.Rd
man/dot-FindObject.Rd
man/show-SeuratCommand-method.Rd
man/dot-DollarNames.Assay.Rd
man/Theta.Rd
man/subset.Assay5.Rd
man/as.sparse.Rd
man/CreateAssayObject.Rd
man/CheckGC.Rd
man/dot-PropagateList.Rd
man/show-Seurat-method.Rd
man/split.Assay.Rd
man/dim.DimReduc.Rd
man/Stdev.Rd
man/CreateDimReducObject.Rd
man/CreateMolecules.Rd
man/sub-.DimReduc.Rd
man/sub-.Assay.Rd
man/dot-RandomKey.Rd
man/Graph-class.Rd
man/dot-SparseSlots.Rd
man/subset.Assay.Rd
man/dot-Deprecate.Rd
man/dot-CheckFmargin.Rd
man/SeuratObject-options.Rd
man/Molecules-class.Rd
man/subset.Seurat.Rd
man/sub-.SeuratCommand.Rd
man/dot-DefaultFOV.Rd
man/labels.LogMap.Rd
man/cash-.Assay.Rd
man/DefaultLayer-StdAssay.Rd
man/Layers-StdAssay.Rd
man/RenameAssays.Rd
man/Misc-StdAssay.Rd
man/Assay5-class.Rd
man/sub-sub-.Seurat.Rd
man/Seurat-class.Rd
man/DimReduc-validity.Rd
man/LogSeuratCommand.Rd
man/merge.DimReduc.Rd
man/dot-MARGIN.Rd
man/Assay5T-class.Rd
man/sub-sub-.Assay.Rd
man/dimnames.Assay5.Rd
man/merge.Assay.Rd
man/dot-DiskLoad.Rd
man/RandomName.Rd
man/IsNamedList.Rd
man/JS.Rd
man/DefaultAssay-StdAssay.Rd
man/aggregate.Rd
man/GetImage.Rd
man/merge.Seurat.Rd
man/Version.Rd
man/LogMap-class.Rd
man/sub-LogMap-method.Rd
man/show-StdAssay-method.Rd
man/dot-DollarNames.Assay5.Rd
man/Layers.Rd
man/Cells-StdAssay.Rd
man/cash-.SeuratCommand.Rd
man/FetchData.Rd
man/as.Centroids.Rd
man/cash-.Assay5.Rd
man/s4list.Rd
man/CreateSeuratObject.Rd
man/AssayData-StdAssay.Rd
man/dot-ClassPkg.Rd
man/SaveSeuratRds.Rd
man/angles.Rd
man/intersect.LogMap.Rd
man/CreateFOV.Rd
man/Seurat-validity.Rd
man/roxygen/meta.R
man/roxygen/templates/desc-validity.R
man/roxygen/templates/return-show.R
man/roxygen/templates/slot-stdassay.R
man/roxygen/templates/seealso-methods.R
man/roxygen/templates/method-features.R
man/roxygen/templates/lifecycle-superseded.R
man/roxygen/templates/method-stdassay.R
man/roxygen/templates/param-dots-ignored.R
man/roxygen/templates/param-dots-method.R
man/roxygen/templates/name-oldv.R
man/roxygen/templates/method-cells.R
man/roxygen/templates/slot-key.R
man/roxygen/templates/section-progressr.R
man/roxygen/templates/method-show.R
man/roxygen/templates/lifecycle-deprecated.R
man/roxygen/templates/lifecycle-experimental.R
man/roxygen/templates/section-future.R
man/roxygen/templates/return-null.R
man/roxygen/templates/note-reqdpkg.R
man/roxygen/templates/slot-misc.R
man/roxygen/templates/param-verbose.R
man/roxygen/templates/method-lengths.R
man/figures/lifecycle-stable.svg
man/figures/lifecycle-superseded.svg
man/figures/lifecycle-questioning.svg
man/figures/lifecycle-archived.svg
man/figures/lifecycle-defunct.svg
man/figures/lifecycle-experimental.svg
man/figures/lifecycle-deprecated.svg
man/figures/lifecycle-maturing.svg
