merge.StdAssay: Merge Assays

In SeuratObject: Data Structures for Single Cell Data

Merge Assays

Description

Merge one or more v5 assays together

Usage

## S3 method for class 'StdAssay'
merge(x, y, labels = NULL, add.cell.ids = NULL, collapse = FALSE, ...)

Arguments

x	An Assay5 object
y	One or more Assay5 objects
labels	A character vector equal to the number of objects; defaults to as.character(seq_along(c(x, y)))
add.cell.ids	A character vector equal to the number of objects provided to append to all cell names; if TRUE, uses labels as add.cell.ids
collapse	If TRUE, merge layers of the same name together; if FALSE, appends labels to the layer name
...	Ignored

Details

Note: collapsing layers is currently not supported

Value

A new v5 assay with data merged from c(x, y)

Note

All assays must be of the same type; merging different v5 assays (eg. Assay5 and Assay5T) is currently unsupported

SeuratObject documentation built on May 29, 2024, 12:31 p.m.