SeuratObject-package: SeuratObject: Data Structures for Single Cell Data

In SeuratObject: Data Structures for Single Cell Data

SeuratObject: Data Structures for Single Cell Data

Description

Defines S4 classes for single-cell genomic data and associated information, such as dimensionality reduction embeddings, nearest-neighbor graphs, and spatially-resolved coordinates. Provides data access methods and R-native hooks to ensure the Seurat object is familiar to other R users. See Satija R, Farrell J, Gennert D, et al (2015) \Sexpr[results=rd]{tools:::Rd_expr_doi("10.1038/nbt.3192")}, Macosko E, Basu A, Satija R, et al (2015) \Sexpr[results=rd]{tools:::Rd_expr_doi("10.1016/j.cell.2015.05.002")}, and Stuart T, Butler A, et al (2019) \Sexpr[results=rd]{tools:::Rd_expr_doi("10.1016/j.cell.2019.05.031")}, Hao Y, Hao S, et al (2021) \Sexpr[results=rd]{tools:::Rd_expr_doi("10.1016/j.cell.2021.04.048")} and Hao Y, et al (2023) \Sexpr[results=rd]{tools:::Rd_expr_doi("10.1101/2022.02.24.481684")} for more details.

Author(s)

Maintainer: Rahul Satija [e-mail] (ORCID)

Authors:

• Paul Hoffman [e-mail] (ORCID)

• David Collins [e-mail] (ORCID)

• Yuhan Hao [e-mail] (ORCID)

• Austin Hartman [e-mail] (ORCID)

• Gesmira Molla [e-mail] (ORCID)

• Andrew Butler [e-mail] (ORCID)

• Tim Stuart [e-mail] (ORCID)

Other contributors:

• Madeline Kowalski [e-mail] (ORCID) [contributor]

• Saket Choudhary [e-mail] (ORCID) [contributor]

• Skylar Li [e-mail] [contributor]

• Longda Jiang [e-mail] (ORCID) [contributor]

• Jeff Farrell [e-mail] [contributor]

• Shiwei Zheng [e-mail] (ORCID) [contributor]

• Christoph Hafemeister [e-mail] (ORCID) [contributor]

• Patrick Roelli [e-mail] [contributor]

See Also

Useful links:

• https://satijalab.github.io/seurat-object/

• https://github.com/satijalab/seurat-object

• Report bugs at https://github.com/satijalab/seurat-object/issues

SeuratObject documentation built on May 29, 2024, 12:31 p.m.