subset.Assay: Subset an Assay

In SeuratObject: Data Structures for Single Cell Data

Subset an Assay

Description

Subset an Assay

Usage

## S3 method for class 'Assay'
subset(x, cells = NULL, features = NULL, ...)

Arguments

x	An Assay object
cells	Cell names
features	Feature names
...	Ignored

Value

x with just the cells and features specified by cells and features

See Also

v3 Assay object, validity, and interaction methods: $.Assay(), Assay-class, Assay-validity, CreateAssayObject(), [.Assay(), [[.Assay(), dim.Assay(), dimnames.Assay(), merge.Assay(), split.Assay()

Examples

rna <- pbmc_small[["RNA"]]
rna2 <- subset(rna, features = VariableFeatures(rna))
rna2

SeuratObject documentation built on Aug. 28, 2025, 1:10 a.m.