Molecules-methods: 'Molecules' Methods

In SeuratObject: Data Structures for Single Cell Data

Molecules Methods

Description

Methods for Molecules objects

Usage

## S3 method for class 'Molecules'
Features(x, ...)

## S3 method for class 'Molecules'
GetTissueCoordinates(object, features = NULL, ...)

## S3 method for class 'Molecules'
subset(x, features = NULL, ...)

## S4 method for signature 'Molecules'
show(object)

Arguments

x, object	A Molecules object
...	Arguments passed to other methods
features	A vector of molecule names to keep; if NULL, defaults to all molecules

Details

Features: Get spatially-resolved molecule names

GetTissueCoordinates: Get spatially-resolved molecule coordinates

subset: Subset a Molecules object to certain molecules

show: Display an object summary to stdout

Value

Features: A vector of spatially-resolved molecule names; if no molecular information present, returns NULL

GetTissueCoordinates: A data frame with three columns:

• “x”: the x-coordinate of a molecule

• “y”: the y-coordinate of a molecule

• “molecule”: the molecule name

subset: x subsetted to the features specified by features

show: Invisibly returns NULL

See Also

Molecules-class

Segmentation layer classes: Centroids-class, Centroids-methods, Molecules-class, Segmentation-class, Segmentation-methods, Segmentation-validity

SeuratObject documentation built on Aug. 28, 2025, 1:10 a.m.