Overlay: Overlay 'Spatial' Objects Over One Another

In SeuratObject: Data Structures for Single Cell Data

Overlay Spatial Objects Over One Another

Description

Create an overlay of some query spatial object (x) against some target object (y). Basically, find all components of a query that fall within the bounds of a target spatial region

Usage

Overlay(x, y, invert = FALSE, ...)

## S4 method for signature 'Centroids,SpatialPolygons'
Overlay(x, y, invert = FALSE, ...)

## S4 method for signature 'Segmentation,SpatialPolygons'
Overlay(x, y, invert = FALSE, ...)

## S4 method for signature 'Molecules,SpatialPolygons'
Overlay(x, y, invert = FALSE, ...)

## S4 method for signature 'FOV,Spatial'
Overlay(x, y, invert = FALSE, ...)

## S4 method for signature 'FOV,SpatialPolygons'
Overlay(x, y, invert = FALSE, ...)

## S4 method for signature 'FOV,FOV'
Overlay(x, y, invert = FALSE, ...)

Arguments

x	Query Spatial object
y	Target Spatial object
invert	Invert the overlay and return only the components of x that fall outside the bounds of y
...	Ignored

Value

x with only the components that fall within the bounds of y

Note

This function requires the sf package to be installed

SeuratObject documentation built on Nov. 18, 2023, 1:06 a.m.