Neighbor-class: The Neighbor class

In SeuratObject: Data Structures for Single Cell Data

The Neighbor class

Description

The Neighbor class is used to store the results of neighbor finding algorithms

Slots

nn.idx

Matrix containing the nearest neighbor indices

nn.dist

Matrix containing the nearest neighbor distances

alg.idx

The neighbor finding index (if applicable). E.g. the annoy index

alg.info

Any information associated with the algorithm that may be needed downstream (e.g. distance metric used with annoy is needed when reading in from stored file).

cell.names

Names of the cells for which the neighbors have been computed.

SeuratObject documentation built on Aug. 28, 2025, 1:10 a.m.