Description Usage Arguments Details Author(s) See Also
This function plots the results for analyse_TL.MAAD. The first page regroups all the information about the additive curves (names, doses, intensity vs. temperature and plateau test for Lx, Tx and Lx/Tx). The second page regroups all the information about the regenerative curves (names, doses, intensity vs. temperature and plateau test for Lx, Tx and Lx/Tx). The third page regroups all the information about the equivalent dose (dose plateau for the palaeodose and the supralinearity correction, growth curves, rejection criteria,...).
1 2 3 4 5 6 7 8 9 | plot_TL.MAAD(sample.name, temperatures, eval.Tmin, eval.Tmax, aNames, aDoses,
aLx, aTx, aLxTx, aLx.plateau, aTx.plateau, aLxTx.plateau, rNames, rDoses, rLx,
rTx, rLxTx, rLx.plateau, rTx.plateau, rLxTx.plateau, DP.Q.line,
DP.Q.line.error, GC.Q.line, GC.Q.slope, GC.Q.LxTx, GC.Q.LxTx.error,
GC.Q.doses, GC.Q.names, DP.I.line, DP.I.line.error, GC.I.line, GC.I.slope,
GC.I.LxTx, GC.I.LxTx.error, GC.I.doses, GC.I.names, Q.DP, Q.DP.error, Q.GC,
Q.GC.error, I.DP, I.DP.error, I.GC, I.GC.error, De.GC, De.GC.error, De.DP,
De.DP.error, rejection.values, fitting.parameters,
plotting.parameters = list(plot.Tmin = 0, plot.Tmax = NA))
|
sample.name |
character (required): Sample name. |
temperatures |
numeric (required): temperature vector |
eval.Tmin |
integer (required): Temperature (<c2><b0>C) of the lower boundary for the signal integration. |
eval.Tmax |
integer (required): Temperature (<c2><b0>C) of the upper boundary for the signal integration. |
aNames |
character (required): Name vector for the additive curves. |
aDoses |
numeric (required): Dose vector for the additive curves. |
aLx |
numeric (required): Lx matrix for the additive curves. |
aTx |
numeric (required): Tx matrix for the additive curves. |
aLxTx |
numeric (required): Lx/Tx matrix for the additive curves. |
aLx.plateau |
numeric (required): Ln/Lx matrix for the additive curves. |
aTx.plateau |
numeric (required): Ln/Tx matrix for the additive curves. |
aLxTx.plateau |
numeric (required): (Ln/Tn)/(Lx/Tx) matrix for the additive curves. |
rNames |
character (required): Name vector for the regenerative curves. |
rDoses |
numeric (required): Dose vector for the regenerative curves. |
rLx |
numeric (required): Lx matrix for the regenerative curves. |
rTx |
numeric (required): Tx matrix for the regenerative curves. |
rLxTx |
numeric (required): Lx/Tx matrix for the regenerative curves. |
rLx.plateau |
numeric (required): Ln/Lx matrix for the regenerative curves. |
rTx.plateau |
numeric (required): Tn/Tx matrix for the regenerative curves. |
rLxTx.plateau |
numeric (required): (Ln/Tn)/(Lx/Tx) matrix for the regenerative curves. |
DP.Q.line |
numeric (required): Vector containing the estimation of Q for each T<c2><b0> step. |
DP.Q.line.error |
numeric (required): Vector containing the uncertainty on the estimation of Q for each T<c2><b0> step. |
GC.Q.line |
numeric (required): growth curve for Q |
GC.Q.slope |
numeric (required): growth curve parameters for Q |
GC.Q.LxTx |
numeric (required): Lx/Tx vector used for Q estimation using the growth curve approach. |
GC.Q.LxTx.error |
numeric (required): Error on the Lx/tx vector used for Q estimation using the growth curve approach. |
GC.Q.doses |
numeric (required): Doses used for Q estimation using the growth curve approach. |
GC.Q.names |
numeric (required): Names of the Lx/tx vector used for Q estimation using the growth curve approach. |
DP.I.line |
numeric (required): Vector containing I for each temperature step. |
DP.I.line.error |
numeric (required): Vector containing the uncertainty on I for each temperature step. |
GC.I.line |
numeric (required): growth curve for I |
GC.I.slope |
numeric (required): growth curve parameters for I. |
GC.I.LxTx |
numeric (required): Lx/tx vector used for I estimation using the growth curve approach. |
GC.I.LxTx.error |
numeric (required): Error on the Lx/tx vector used for I estimation using the growth curve approach. |
GC.I.doses |
numeric (required): Doses used for I estimation using the growth curve approach. |
GC.I.names |
numeric (required): Names of the Lx/Tx vector used for I estimation using the growth curve approach. |
Q.DP |
numeric (required): Q estimation using the dose plateau approach |
Q.DP.error |
numeric (required): Uncertainty on the Q estimation using the dose plateau approach |
Q.GC |
numeric (required): Q estimation using the growth curve approach |
Q.GC.error |
numeric (required): Uncertainty on the Q estimation using the growth curve approach |
I.DP |
numeric (required): I estimation using the dose plateau approach |
I.DP.error |
numeric (required): Uncertainty on the I estimation using the dose plateau approach |
I.GC |
numeric (required): I estimation using the growth curve approach |
I.GC.error |
numeric (required): Uncertainty on the I estimation using the growth curve approach |
De.GC, |
numeric (required): ED (Q+I) estimation using the growth curve approach |
De.GC.error, |
numeric (required): Uncertainty on the ED (Q+I) estimation using the growth curve approach |
De.DP, |
numeric (required): ED (Q+I) estimation using the dose plateau approach |
De.DP.error |
numeric (required): Uncertainty on the ED (Q+I) estimation using the dose plateau approach |
rejection.values |
list (required): result of the rejection tests. |
fitting.parameters |
list (with default): list containing the fitting parameters. See details. |
plotting.parameters |
list (with default): list containing the plotting parameters. See details. |
Fitting parameters
The fitting parameters are:
method
character: Fitting method (LIN
, EXP
, EXP+LIN
or EXP+EXP
).
fit.weighted
logical: If the fitting is weighted or not.
fit.use.slope
logical: If the slope of the Q growth curve is reused for the supralinearity correction.
fit.aDoses.min
numeric: Lowest additive dose used for the fitting.
fit.aDoses.max
numeric: Highest additive dose used for the fitting.
fit.rDoses.min
numeric: Lowest regenerative dose used for the fitting.
fit.rDoses.max
numeric: Highest regenerative dose used for the fitting.
See also analyse_TL.MAAD, calc_TL.MAAD.fit.Q and calc_TL.MAAD.fit.I.
Plotting parameters
The plotting parameters are:
plot.Tmin
numeric: Lower temperature plotted.
plot.Tmax
numeric: Higher temperature plotted.
no.plot
logical: If TRUE
, the results will not be plotted.
See also analyse_TL.MAAD.
David Strebler
analyse_TL.MAAD, calc_TL.MAAD.fit.Q, calc_TL.MAAD.fit.I.
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