Description Usage Arguments Details Value Author(s) See Also
View source: R/script_TL.pretreatment.R
This script call a series of data pretreatment functions for TL dating. It only requires the name of the files with the TL curves and the relative error on the measurement.
| 1 2 3 4 5 | script_TL.pretreatment(file.name, k = 1, remove.discs = NULL,
  file.parameters = list(file.extension = ".binx", folder.in = "./",
  folder.out = "./"), aligning.parameters = list(peak.Tmin = NULL, peak.Tmax =
  NULL, no.testdose = FALSE), plotting.parameters = list(plot.Tmin = 0,
  plot.Tmax = NA, no.plot = FALSE))
 | 
| file.name | character (required): Name of the file containing the luminescence data. | 
| k | numeric (with default): Corrective factor for estimating the uncertainties using a poisson distribution. | 
| remove.discs | numeric (with default): list containing the position of the aliquots to remove. | 
| file.parameters | list (with default): list containing the file parameters. See details. | 
| aligning.parameters | list (with default): list containing the aligning parameters. See details. | 
| plotting.parameters | list (with default): list containing the plotting parameters. See details. | 
Aligning parameters 
The aligning parameters are:  
peak.Tminnumeric: Lower boundary for looking at the peak maximum position.
peak.Tmaxnumeric: Upper boundary for looking at the peak maximum position.
no.testdoselogical: If TRUE, the function will use the Lx curves rather the Tx curves as reference for the peak maximum position.
Plotting parameters 
The plotting parameters are:  
plot.Tminnumeric: Lower temperature plotted.
plot.Tmaxnumeric: Higher temperature plotted.
no.plotlogical: If TRUE, the results will not be plotted.
See also plot_TL.MAAD. 
File parameters 
The plotting parameters are:  
file.extensioncharacter (with default): extension of the file containing the luminescence data (.bin or .binx)
folder.incharacter (with default): Folder containing the file with the luminescene data.
folder.outcharacter (with default): Folder containing the file with the new luminescene data.
see also mod_update.dType.
This function return a TLum.Analysis where the preheat were removed, the background substract and the peaks aligned.
Its  save the result as a .binx file il the specified folder.
And, its plots the results from the differents functions called using:
plot_extract.TL,
plot_remove.preheat,
plot_substract.background and
plot_align.peaks. 
David Strebler, University of Cologne (Germany), 
 David Strebler
read_BIN2R, Risoe.BINfileData2TLum.BIN.File, mod_extract.TL, mod_update.dType, mod_remove.aliquot, mod_remove.preheat, mod_substract.background, mod_align.peaks, write_R2BIN.
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