Nothing
VLF: Frequency Matrix Approach for Assessing Very Low Frequency Variants in Sequence Records
Using frequency matrices, very low frequency variants (VLFs) are assessed for amino acid and nucleotide sequences. The VLFs are then compared to see if they occur in only one member of a species, singleton VLFs, or if they occur in multiple members of a species, shared VLFs. The amino acid and nucleotide VLFs are then compared to see if they are concordant with one another. Amino acid VLFs are also assessed to determine if they lead to a change in amino acid residue type, and potential changes to protein structures. Based on Stoeckle and Kerr (2012) <doi:10.1371/journal.pone.0043992>.
Getting started
Browse package contents
Package details |
|
|---|---|
| Author | Taryn B. T. Athey [aut, cre], Paul D. McNicholas [aut, cre], Jarrett D. Phillips [ctb] |
| Maintainer | Taryn B. T. Athey <taryn.athey@gmail.com> |
| License | GPL (>= 3) |
| Version | 1.1 |
| Package repository | View on CRAN |
| Installation |
Install the latest version of this package by entering the following in R:
|
Try the VLF package in your browser
Any scripts or data that you put into this service are public.
