fasta.read: Read Fasta Files
In VLF: Frequency Matrix Approach for Assessing Very Low Frequency Variants in Sequence Records
fasta.read R Documentation
Read Fasta Files
Description
Reads in fasta files and converts into sequence matrix
Usage
fasta.read(file, seqlength = 648, pos1 = 1, pos2 = 3)
Arguments
file
A fasta file to be read in.
seqlength
Length of sequence.
pos1
The position within the fasta title of the unique specimen identifier. By default pos1 = 1.
pos2
The position within the fasta title of the species name. By default pos2 = 3.
Value
A matrix of sequences, with the unique specimen identifers in the first column, the species names in the second column, and the sequence starting in the third column.
Author(s)
Taryn B. T. Athey and Paul D. McNicholas
VLF documentation built on Aug. 18, 2022, 5:06 p.m.
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| fasta.read | R Documentation |
Read Fasta Files
Description
Reads in fasta files and converts into sequence matrix
Usage
fasta.read(file, seqlength = 648, pos1 = 1, pos2 = 3)
Arguments
file |
A fasta file to be read in. |
seqlength |
Length of sequence. |
pos1 |
The position within the fasta title of the unique specimen identifier. By default pos1 = 1. |
pos2 |
The position within the fasta title of the species name. By default pos2 = 3. |
Value
A matrix of sequences, with the unique specimen identifers in the first column, the species names in the second column, and the sequence starting in the third column.
Author(s)
Taryn B. T. Athey and Paul D. McNicholas
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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