aa.MODE.freq: Amino Acid Modal Frequencies

In VLF: Frequency Matrix Approach for Assessing Very Low Frequency Variants in Sequence Records

Amino Acid Modal Frequencies

Description

Returns the frequencies of the amino acids that occur most often in each position of the sequence.

Usage

aa.MODE.freq(freq.matrix, seqlength)

Arguments

freq.matrix	Frequency matrix for amino acids.
seqlength	Length of the amino acid sequences

Details

The argument freq.matrix can be calculated using the function aa.frequency.matrix.function

Value

A vector of frequencies for the first modal sequence.

Author(s)

Taryn B. T. Athey and Paul D. McNicholas

Examples

## Not run: data(birds_aminoAcids)
birds_aminoAcid_count <- aa.count.function(birds_aminoAcids, 216)
aminoAcid_frequency.Matrix <- aa.frequency.matrix.function(birds_aminoAcid_count, 216)
aminoAcid_firstModalFreq <- aa.MODE.freq(aminoAcid_frequency.Matrix, 216)
## End(Not run)

VLF documentation built on April 12, 2025, 1:22 a.m.