ffrequency.matrix.function: Frequency Matrix

In VLF: Frequency Matrix Approach for Assessing Very Low Frequency Variants in Sequence Records

Frequency Matrix

Description

Calculates the frequency of each dNTP in each position of a nucleotide count matrix.

Usage

ffrequency.matrix.function(count.matrix, seqlength)

Arguments

count.matrix	A matrix of the counts for each dNTP from a matrix of aligned sequences.
seqlength	Length of sequences.

Details

The argument count.matrix can be calculated using the function count.function.

Value

A matrix of the frequencies for each dNTP in each position of the barcode sequence.

Author(s)

Taryn B. T. Athey and Paul D. McNicholas

Examples

## Not run: #Nucleotide VLF analysis
data(birds)
Nuc.count <- count.function(birds, specimen.Number, 648)
frequency.matrix <- ffrequency.matrix.function(Nuc.count, 648)
## End(Not run)

VLF documentation built on April 12, 2025, 1:22 a.m.