aa.MODE: Amino Acid Modal Sequence

In VLF: Frequency Matrix Approach for Assessing Very Low Frequency Variants in Sequence Records

Amino Acid Modal Sequence

Description

Calculates the amino acid sequence that occurs most often in a matrix of amino acid sequences

Usage

aa.MODE(freq.matrix, seqlength)

Arguments

freq.matrix	Freuqncy matrix for amino acids.
seqlength	Length of amino acid sequences.

Details

The argument freq.matrix can be calculated using the function aa.frequency.matrix.function

Value

A vector containing the amino acid sequence that occurs most often.

Author(s)

Taryn B. T. Athey and Paul D. McNicholas

Examples

## Not run: data(birds_aminoAcids)
birds_aminoAcid_count <- aa.count.function(birds_aminoAcids, 216)
aminoAcid_frequency.Matrix <- aa.frequency.matrix.function(birds_aminoAcid_count, 216)
aminoAcid_Modal <- aa.MODE(aminoAcid_frequency.Matrix, 216)
## End(Not run)

VLF documentation built on April 12, 2025, 1:22 a.m.