API for VLF
Frequency Matrix Approach for Assessing Very Low Frequency Variants in Sequence Records

Global functions
Decile.Plot Man page Source code
Error.Rate Man page Source code
MODE Man page Source code
MODE.freq Man page Source code
MODE.second.freq Man page Source code
Sliding.Window Man page Source code
VLF Man page
VLF-package Man page
VLF.aminoAcids Man page Source code
VLF.convert.matrix Man page Source code
VLF.count.pos Man page Source code
VLF.count.spec Man page Source code
VLF.nucleotides Man page Source code
VLF.reduced Man page Source code
aa.MODE Man page Source code
aa.MODE.freq Man page Source code
aa.MODE.second.freq Man page Source code
aa.VLF.convert.matrix Man page Source code
aa.VLF.count.pos Man page Source code
aa.VLF.count.spec Man page Source code
aa.VLF.reduced Man page Source code
aa.compare Man page Source code
aa.conservation_first Man page Source code
aa.conservation_two Man page Source code
aa.count.function Man page Source code
aa.find.singles Man page Source code
aa.frequency.matrix.function Man page Source code
aa.specimen.frequencies Man page Source code
aaVLFs.to.modalchanges Man page Source code
aminoAcid.matching.positions Man page Source code
aminoAcidFun Man page Source code
birds Man page
birds_aminoAcids Man page
compare Man page Source code
concordanceFun Man page Source code
concordant.to.modalchanges Man page Source code
conservation_first Man page Source code
conservation_two Man page Source code
count.function Man page Source code
fasta.read Man page Source code
ffrequency.matrix.function Man page Source code
find.matching Man page Source code
find.singles Man page Source code
matched.codon.position Man page Source code
nucleotide.matching.positions Man page Source code
overall.matched Man page Source code
separate Man page Source code
specimen.frequencies Man page Source code
vlfFun Man page Source code
VLF documentation built on May 29, 2017, 1:39 p.m.