aa.frequency.matrix.function: Amino Acid Frequency Matrix

In VLF: Frequency Matrix Approach for Assessing Very Low Frequency Variants in Sequence Records

Amino Acid Frequency Matrix

Description

Calculates the frequency of each amino acid.

Usage

aa.frequency.matrix.function(aa.count, seqlength)

Arguments

aa.count	A matrix containing the number of each amino acid in each position.
seqlength	The length of the amino acid sequence

Details

The aa.count argument can be calculated using the function aa.count.function

Value

A matrix of the frequencies for each amino acid in each position of the barcode sequence.

Author(s)

Taryn B. T. Athey and Paul D. McNicholas

Examples

## Not run: data(birds_aminoAcids)
birds_aminoAcid_count <- aa.count.function(birds_aminoAcids, 216)
aminoAcid_frequency.Matrix <- aa.frequency.matrix.function(birds_aminoAcid_count, 216)
## End(Not run)

VLF documentation built on April 12, 2025, 1:22 a.m.