API for VLF
Frequency Matrix Approach for Assessing Very Low Frequency Variants in Sequence Records
| Global functions | |
|---|---|
| Decile.Plot | Man page Source code |
| Error.Rate | Man page Source code |
| MODE | Man page Source code |
| MODE.freq | Man page Source code |
| MODE.second.freq | Man page Source code |
| Sliding.Window | Man page Source code |
| VLF | Man page |
| VLF-package | Man page |
| VLF.aminoAcids | Man page Source code |
| VLF.convert.matrix | Man page Source code |
| VLF.count.pos | Man page Source code |
| VLF.count.spec | Man page |
| VLF.nucleotides | Man page Source code |
| VLF.reduced | Man page Source code |
| aa.MODE | Man page Source code |
| aa.MODE.freq | Man page Source code |
| aa.MODE.second.freq | Man page Source code |
| aa.VLF.convert.matrix | Man page Source code |
| aa.VLF.count.pos | Man page Source code |
| aa.VLF.count.spec | Man page |
| aa.VLF.reduced | Man page Source code |
| aa.compare | Man page Source code |
| aa.conservation_first | Man page Source code |
| aa.conservation_two | Man page Source code |
| aa.count.function | Man page Source code |
| aa.find.singles | Man page Source code |
| aa.frequency.matrix.function | Man page Source code |
| aa.specimen.frequencies | Man page Source code |
| aaVLFs.to.modalchanges | Man page Source code |
| aminoAcid.matching.positions | Man page Source code |
| aminoAcidFun | Man page Source code |
| birds | Man page |
| birds_aminoAcids | Man page |
| compare | Man page Source code |
| concordanceFun | Man page Source code |
| concordant.to.modalchanges | Man page Source code |
| conservation_first | Man page Source code |
| conservation_two | Man page Source code |
| count.function | Man page Source code |
| fasta.read | Man page Source code |
| ffrequency.matrix.function | Man page Source code |
| find.matching | Man page Source code |
| find.singles | Man page Source code |
| matched.codon.position | Man page Source code |
| nucleotide.matching.positions | Man page Source code |
| overall.matched | Man page Source code |
| separate | Man page Source code |
| specimen.frequencies | Man page Source code |
| vlfFun | Man page Source code |
