ade4: Analysis of Ecological Data : Exploratory and Euclidean Methods in Environmental Sciences

Multivariate data analysis and graphical display.

AuthorStéphane Dray <stephane.dray@univ-lyon1.fr>, Anne-Béatrice Dufour <anne-beatrice.dufour@univ-lyon1.fr>, and Jean Thioulouse <jean.thioulouse@univ-lyon1.fr>, with contributions from Thibaut Jombart, Sandrine Pavoine, Jean R. Lobry, Sébastien Ollier, and Aurélie Siberchicot. Based on earlier work by Daniel Chessel.
Date of publication2016-12-13 15:33:16
MaintainerAurélie Siberchicot <aurelie.siberchicot@univ-lyon1.fr>
LicenseGPL (>= 2)
Version1.7-5
http://pbil.univ-lyon1.fr/ADE-4
Mailing list: http://listes.univ-lyon1.fr/wws/info/adelist

View on CRAN

Man pages

abouheif.eg: Phylogenies and quantitative traits from Abouheif

acacia: Spatial pattern analysis in plant communities

add.scatter: Add graphics to an existing plot

ade4-deprecated: Deprecated functions in ade4

ade4-internal: Internal ade4 functions

ade4.package: The ade4 package

ade4toR: Format Change Utility

adegraphicsLoaded: Utility function to test if the package adegraphics is loaded

aminoacyl: Codon usage

amova: Analysis of molecular variance

apis108: Allelic frequencies in ten honeybees populations at eight...

apqe: Apportionment of Quadratic Entropy

aravo: Distribution of Alpine plants in Aravo (Valloire, France)

ardeche: Fauna Table with double (row and column) partitioning

area.plot: Graphical Display of Areas

arrival: Arrivals at an intensive care unit

as.taxo: Taxonomy

atlas: Small Ecological Dataset

atya: Genetic variability of Cacadors

avijons: Bird species distribution

avimedi: Fauna Table for Constrained Ordinations

aviurba: Ecological Tables Triplet

bacteria: Genomes of 43 Bacteria

banque: Table of Factors

baran95: African Estuary Fishes

bca.rlq: Between-Class RLQ analysis

between: Between-Class Analysis

betweencoinertia: Between-class coinertia analysis

bf88: Cubic Ecological Data

bicenter.wt: Double Weighted Centring

bordeaux: Wine Tasting

bsetal97: Ecological and Biological Traits

buech: Buech basin

butterfly: Genetics-Ecology-Environment Triple

bwca.dpcoa: Between- and within-class double principal coordinate...

cailliez: Transformation to make Euclidean a distance matrix

capitales: Road Distances

carni19: Phylogeny and quantative trait of carnivora

carni70: Phylogeny and quantitative traits of carnivora

carniherbi49: Taxonomy, phylogenies and quantitative traits of carnivora...

casitas: Enzymatic polymorphism in Mus musculus

cca: Canonical Correspondence Analysis

chatcat: Qualitative Weighted Variables

chats: Pair of Variables

chazeb: Charolais-Zebus

chevaine: Enzymatic polymorphism in Leuciscus cephalus

chickenk: Veterinary epidemiological study to assess the risk factors...

clementines: Fruit Production

cnc2003: Frequenting movie theaters in France in 2003

coinertia: Coinertia Analysis

coleo: Table of Fuzzy Biological Traits

combine.4thcorner: Functions to combine and adjust the outputs 3-table methods

corkdist: Tests of randomization between distances applied to 'kdist'...

corvus: Corvus morphology

costatis: STATIS and Co-Inertia : Analysis of a series of paired...

costatis.randtest: Monte-Carlo test on a Costatis analysis (in C).

deug: Exam marks for some students

disc: Rao's dissimilarity coefficient

discrimin: Linear Discriminant Analysis (descriptive statistic)

discrimin.coa: Discriminant Correspondence Analysis

dist.binary: Computation of Distance Matrices for Binary Data

dist.dudi: Computation of the Distance Matrix from a Statistical Triplet

dist.genet: Genetic distances from gene frequencies

dist.ktab: Mixed-variables coefficient of distance

dist.neig: Computation of the Distance Matrix associated to a...

dist.prop: Computation of Distance Matrices of Percentage Data

dist.quant: Computation of Distance Matrices on Quantitative Variables

divc: Rao's diversity coefficient also called quadratic entropy

divcmax: Maximal value of Rao's diversity coefficient also called...

dotchart.phylog: Representation of many quantitative variables in front of a...

dotcircle: Representation of n values on a circle

doubs: Pair of Ecological Tables

dpcoa: Double principal coordinate analysis

dudi: Duality Diagram

dudi.acm: Multiple Correspondence Analysis

dudi.coa: Correspondence Analysis

dudi.dec: Decentred Correspondence Analysis

dudi.fca: Fuzzy Correspondence Analysis and Fuzzy Principal Components...

dudi.hillsmith: Ordination of Tables mixing quantitative variables and...

dudi.mix: Ordination of Tables mixing quantitative variables and...

dudi.nsc: Non symmetric correspondence analysis

dudi.pca: Principal Component Analysis

dudi.pco: Principal Coordinates Analysis

dunedata: Dune Meadow Data

ecg: Electrocardiogram data

ecomor: Ecomorphological Convergence

EH: Amount of Evolutionary History

elec88: Electoral Data

escopage: K-tables of wine-tasting

euro123: Triangular Data

fission: Fission pattern and heritable morphological traits

foucart: K-tables Correspondence Analysis with the same rows and the...

fourthcorner: Functions to compute the fourth-corner statistic

friday87: Faunistic K-tables

fruits: Pair of Tables

fuzzygenet: Reading a table of genetic data (diploid individuals)

gearymoran: Moran's I and Geary'c randomization tests for spatial and...

genet: A class of data: tables of populations and alleles

ggtortoises: Microsatellites of Galapagos tortoises populations

granulo: Granulometric Curves

gridrowcol: Complete regular grid analysis

hdpg: Genetic Variation In Human Populations

housetasks: Contingency Table

humDNAm: human mitochondrial DNA restriction data

ichtyo: Point sampling of fish community

inertia.dudi: Decomposition of inertia (i.e. contributions) in multivariate...

irishdata: Geary's Irish Data

is.euclid: Is a Distance Matrix Euclidean?

julliot: Seed dispersal

jv73: K-tables Multi-Regions

kcponds: Ponds in a nature reserve

kdist: the class of objects 'kdist' (K distance matrices)

kdist2ktab: Transformation of K distance matrices (object 'kdist') into K...

kdisteuclid: a way to obtain Euclidean distance matrices

kplot: Generic Function for Multiple Graphs in a K-tables Analysis

kplot.foucart: Multiple Graphs for the Foucart's Correspondence Analysis

kplot.mcoa: Multiple Graphs for a Multiple Co-inertia Analysis

kplot.mfa: Multiple Graphs for a Multiple Factorial Analysis

kplot.pta: Multiple Graphs for a Partial Triadic Analysis

kplot.sepan: Multiple Graphs for Separated Analyses in a K-tables

kplot.statis: Multiple Graphs of a STATIS Analysis

krandtest: Class of the Permutation Tests (in C).

ktab: the class of objects 'ktab' (K-tables)

ktab.data.frame: Creation of K-tables from a data frame

ktab.list.df: Creating a K-tables from a list of data frames.

ktab.list.dudi: Creation of a K-tables from a list of duality diagrams

ktab.match2ktabs: STATIS and Co-Inertia : Analysis of a series of paired...

ktab.within: Process to go from a Within Analysis to a K-tables

lascaux: Genetic/Environment and types of variables

lingoes: Transformation of a Distance Matrix for becoming Euclidean

lizards: Phylogeny and quantitative traits of lizards

macaca: Landmarks

macon: Wine Tasting

macroloire: Assemblages of Macroinvertebrates in the Loire River (France)

mafragh: Phyto-Ecological Survey

mantel.randtest: Mantel test (correlation between two distance matrices (in...

mantel.rtest: Mantel test (correlation between two distance matrices (in...

maples: Phylogeny and quantitative traits of flowers

mariages: Correspondence Analysis Table

mbpcaiv: Multiblock principal component analysis with instrumental...

mbpls: Multiblock partial least squares

mcoa: Multiple CO-inertia Analysis

mdpcoa: Multiple Double Principal Coordinate Analysis

meau: Ecological Data : sites-variables, sites-species, where and...

meaudret: Ecological Data : sites-variables, sites-species, where and...

mfa: Multiple Factorial Analysis

microsatt: Genetic Relationships between cattle breeds with...

mjrochet: Phylogeny and quantitative traits of teleos fishes

mld: Multi Level Decomposition of unidimensional data

mollusc: Faunistic Communities and Sampling Experiment

monde84: Global State of the World in 1984

morphosport: Athletes' Morphology

mstree: Minimal Spanning Tree

multiblock: Display and summarize multiblock objects

multispati: Multivariate spatial analysis

multispati.randtest: Multivariate spatial autocorrelation test (in C)

multispati.rtest: Multivariate spatial autocorrelation test

neig: Neighbourhood Graphs

newick2phylog: Create phylogeny

newick.eg: Phylogenetic trees in Newick format

niche: Method to Analyse a pair of tables : Environmental and...

nipals: Non-linear Iterative Partial Least Squares (NIPALS) algorithm

njplot: Phylogeny and trait of bacteria

olympic: Olympic Decathlon

optimEH: Nee and May's optimizing process

oribatid: Oribatid mite

originality: Originality of a species

orisaved: Maximal or minimal amount of originality saved under optimal...

orthobasis: Orthonormal basis for orthonormal transform

orthogram: Orthonormal decomposition of variance

ours: A table of Qualitative Variables

palm: Phylogenetic and quantitative traits of amazonian palm trees

pap: Taxonomy and quantitative traits of carnivora

pcaiv: Principal component analysis with respect to instrumental...

pcaivortho: Principal Component Analysis with respect to orthogonal...

pcoscaled: Simplified Analysis in Principal Coordinates

pcw: Distribution of of tropical trees along the Panama canal

perthi02: Contingency Table with a partition in Molecular Biology

phylog: Phylogeny

PI2newick: Import data files from Phylogenetic Independance Package

piosphere: Plant traits response to grazing

plot.between: Between-Class Analysis

plot.phylog: Plot phylogenies

plot.within: Within-Class Analysis

presid2002: Results of the French presidential elections of 2002

procella: Phylogeny and quantitative traits of birds

procuste: Simple Procruste Rotation between two sets of points

procuste.randtest: Monte-Carlo Test on the sum of the singular values of a...

procuste.rtest: Monte-Carlo Test on the sum of the singular values of a...

pta: Partial Triadic Analysis of a K-tables

quasieuclid: Transformation of a distance matrice to a Euclidean one

randboot: Bootstrap simulations

randboot.multiblock: Bootstraped simulations for multiblock methods

randEH: Nee and May's random process

randtest: Class of the Permutation Tests (in C).

randtest.amova: Permutation tests on an analysis of molecular variance (in...

randtest.between: Monte-Carlo Test on the between-groups inertia percentage (in...

randtest.coinertia: Monte-Carlo test on a Co-inertia analysis (in C).

randtest.discrimin: Monte-Carlo Test on a Discriminant Analysis (in C).

randtest.dpcoa: Permutation test for double principal coordinate analysis...

randtest.pcaiv: Monte-Carlo Test on the percentage of explained (i.e....

randxval: Two-fold cross-validation

rankrock: Ordination Table

reconst: Reconstitution of Data from a Duality Diagram

rhizobium: Genetic structure of two nitrogen fixing bacteria influenced...

rhone: Physico-Chemistry Data

rlq: RLQ analysis

rpjdl: Avifauna and Vegetation

rtest: Class of the Permutation Tests (in R).

rtest.between: Monte-Carlo Test on the between-groups inertia percentage (in...

rtest.discrimin: Monte-Carlo Test on a Discriminant Analysis (in R).

RVdist.randtest: Tests of randomization on the correlation between two...

RV.rtest: Monte-Carlo Test on the sum of eigenvalues of a co-inertia...

santacatalina: Indirect Ordination

sarcelles: Array of Recapture of Rings

s.arrow: Plot of the factorial maps for the projection of a vector...

scalewt: Compute or scale data using (weighted) means, variances and...

scatter: Graphical representation of the outputs of a multivariate...

scatter.acm: Plot of the factorial maps in a Multiple Correspondence...

scatter.coa: Plot of the factorial maps for a correspondence analysis

scatter.dudi: Plot of the Factorial Maps

scatter.fca: Plot of the factorial maps for a fuzzy correspondence...

scatterutil: Graphical utility functions

s.chull: Plot of the factorial maps with polygons of contour by level...

s.class: Plot of factorial maps with representation of point classes

sco.boxplot: Representation of the link between a variable and a set of...

sco.class: 1D plot of a numeric score and a factor with labels

sco.distri: Representation by mean- standard deviation of a set of weight...

sco.gauss: Relationships between one score and qualitative variables

sco.label: 1D plot of a numeric score with labels

sco.match: 1D plot of a pair of numeric scores with labels

sco.quant: Graph to Analyse the Relation between a Score and...

s.corcircle: Plot of the factorial maps of a correlation circle

score: Graphs for One Dimension

score.acm: Graphs to study one factor in a Multiple Correspondence...

score.coa: Reciprocal scaling after a correspondence analysis

score.mix: Graphs to Analyse a factor in a Mixed Analysis

score.pca: Graphs to Analyse a factor in PCA

s.distri: Plot of a frequency distribution

seconde: Students and Subjects

sepan: Separated Analyses in a K-tables

s.hist: Display of a scatterplot and its two marginal histograms

s.image: Graph of a variable using image and contour

s.kde2d: Scatter Plot with Kernel Density Estimate

skulls: Morphometric Evolution

s.label: Scatter Plot

s.logo: Representation of an object in a graph by a picture

s.match: Plot of Paired Coordinates

s.match.class: Scatterplot of two sets of coordinates and a partionning into...

s.multinom: Graph of frequency profiles (useful for instance in genetic)

statico: STATIS and Co-Inertia : Analysis of a series of paired...

statico.krandtest: Monte-Carlo test on a Statico analysis (in C).

statis: STATIS, a method for analysing K-tables

steppe: Transect in the Vegetation

s.traject: Trajectory Plot

supcol: Projections of Supplementary Columns

suprow: Projections of Supplementary Rows

s.value: Representation of a value in a graph

symbols.phylog: Representation of a quantitative variable in front of a...

syndicats: Two Questions asked on a Sample of 1000 Respondents

t3012: Average temperatures of 30 French cities

table.cont: Plot of Contingency Tables

table.dist: Graph Display for Distance Matrices

table.paint: Plot of the arrays by grey levels

table.phylog: Plot arrays in front of a phylogenetic tree

table.value: Plot of the Arrays

tarentaise: Mountain Avifauna

taxo.eg: Examples of taxonomy

testdim: Function to perform a test of dimensionality

testdim.multiblock: Selection of the number of dimension by two-fold...

tintoodiel: Tinto and Odiel estuary geochemistry

tithonia: Phylogeny and quantitative traits of flowers

tortues: Morphological Study of the Painted Turtle

toxicity: Homogeneous Table

triangle.class: Triangular Representation and Groups of points

triangle.plot: Triangular Plotting

trichometeo: Pair of Ecological Data

ungulates: Phylogeny and quantitative traits of ungulates.

uniquewt.df: Elimination of Duplicated Rows in a Array

variance.phylog: The phylogenetic ANOVA

vegtf: Vegetation in Trois-Fontaines

veuvage: Example for Centring in PCA

wca.rlq: Within-Class RLQ analysis

westafrica: Freshwater fish zoogeography in west Africa

within: Within-Class Analysis

withincoinertia: Within-class coinertia analysis

withinpca: Normed within principal component analysis

witwit.coa: Internal Correspondence Analysis

woangers: Plant assemblages in woodlands of the conurbation of Angers...

worksurv: French Worker Survey (1970)

yanomama: Distance Matrices

zealand: Road distances in New-Zealand

Files in this package

ade4
ade4/inst
ade4/inst/pictures
ade4/inst/pictures/ireland.pnm
ade4/inst/pictures/tintoodiel.pnm
ade4/inst/pictures/avijonsvil.pnm
ade4/inst/pictures/sarcelles.pnm
ade4/inst/pictures/paris.pnm
ade4/inst/pictures/avijonsrou.pnm
ade4/inst/pictures/butterfly.pnm
ade4/inst/pictures/atyadigi.pnm
ade4/inst/pictures/atyacarto.pnm
ade4/inst/pictures/avijonsveg.pnm
ade4/inst/pictures/fatala.pnm
ade4/inst/pictures/capitales.pnm
ade4/inst/pictures/france_sm00.pnm
ade4/inst/pictures/avijonseau.pnm
ade4/inst/CITATION
ade4/src
ade4/src/Makevars
ade4/src/adesub.h
ade4/src/divsub.h
ade4/src/divsub.c
ade4/src/fourthcorner.c
ade4/src/phylog.c
ade4/src/tests.c
ade4/src/testrlq.c
ade4/src/testdim.c
ade4/src/testamova.c
ade4/src/adesub.c
ade4/NAMESPACE
ade4/data
ade4/data/baran95.rda
ade4/data/mafragh.rda
ade4/data/buech.rda
ade4/data/taxo.eg.rda
ade4/data/lascaux.rda
ade4/data/acacia.rda
ade4/data/westafrica.rda
ade4/data/meaudret.rda
ade4/data/corvus.rda
ade4/data/macroloire.rda
ade4/data/bacteria.rda
ade4/data/aminoacyl.rda
ade4/data/macaca.rda
ade4/data/fruits.rda
ade4/data/bsetal97.rda
ade4/data/bf88.rda
ade4/data/chats.rda
ade4/data/abouheif.eg.rda
ade4/data/deug.rda
ade4/data/piosphere.rda
ade4/data/chazeb.rda
ade4/data/clementines.rda
ade4/data/seconde.rda
ade4/data/perthi02.rda
ade4/data/fission.rda
ade4/data/elec88.rda
ade4/data/ecg.rda
ade4/data/chatcat.rda
ade4/data/yanomama.rda
ade4/data/escopage.rda
ade4/data/mollusc.rda
ade4/data/ungulates.rda
ade4/data/ecomor.rda
ade4/data/carniherbi49.rda
ade4/data/julliot.rda
ade4/data/humDNAm.rda
ade4/data/veuvage.rda
ade4/data/aravo.rda
ade4/data/kcponds.rda
ade4/data/avimedi.rda
ade4/data/banque.rda
ade4/data/tithonia.rda
ade4/data/syndicats.rda
ade4/data/tintoodiel.rda
ade4/data/avijons.rda
ade4/data/trichometeo.rda
ade4/data/meau.rda
ade4/data/dunedata.rda
ade4/data/atya.rda
ade4/data/capitales.rda
ade4/data/rpjdl.rda
ade4/data/chevaine.rda
ade4/data/woangers.rda
ade4/data/pcw.rda
ade4/data/monde84.rda
ade4/data/lizards.rda
ade4/data/ardeche.rda
ade4/data/vegtf.rda
ade4/data/irishdata.rda
ade4/data/t3012.rda
ade4/data/microsatt.rda
ade4/data/oribatid.rda
ade4/data/casitas.rda
ade4/data/rhizobium.rda
ade4/data/hdpg.rda
ade4/data/friday87.rda
ade4/data/olympic.rda
ade4/data/palm.rda
ade4/data/maples.rda
ade4/data/sarcelles.rda
ade4/data/ours.rda
ade4/data/mariages.rda
ade4/data/apis108.rda
ade4/data/ggtortoises.rda
ade4/data/ichtyo.rda
ade4/data/presid2002.rda
ade4/data/macon.rda
ade4/data/datalist
ade4/data/mjrochet.rda
ade4/data/tortues.rda
ade4/data/chickenk.rda
ade4/data/zealand.rda
ade4/data/carni19.rda
ade4/data/steppe.rda
ade4/data/tarentaise.rda
ade4/data/bordeaux.rda
ade4/data/euro123.rda
ade4/data/arrival.rda
ade4/data/coleo.rda
ade4/data/granulo.rda
ade4/data/jv73.rda
ade4/data/rhone.rda
ade4/data/santacatalina.rda
ade4/data/cnc2003.rda
ade4/data/newick.eg.rda
ade4/data/worksurv.rda
ade4/data/toxicity.rda
ade4/data/doubs.rda
ade4/data/carni70.rda
ade4/data/pap.rda
ade4/data/housetasks.rda
ade4/data/aviurba.rda
ade4/data/njplot.rda
ade4/data/procella.rda
ade4/data/atlas.rda
ade4/data/morphosport.rda
ade4/data/rankrock.rda
ade4/data/butterfly.rda
ade4/data/skulls.rda
ade4/R
ade4/R/ade4toR.R ade4/R/multiblock.R ade4/R/randxval.R ade4/R/s.chull.R ade4/R/dist.quant.R ade4/R/sco.gauss.R ade4/R/sco.match.R ade4/R/s.distri.R ade4/R/randEH.R ade4/R/randtest.dpcoa.R ade4/R/score.coa.R ade4/R/s.logo.R ade4/R/rlq.R ade4/R/uniquewt.df.R ade4/R/dudi.R ade4/R/dudi.pca.R ade4/R/dudi.fca.R ade4/R/foucart.R ade4/R/dudi.mix.R ade4/R/sepan.R ade4/R/dist.ktab.R ade4/R/randtest.between.R ade4/R/mcoa.R ade4/R/krandboot.R ade4/R/s.traject.R ade4/R/divcmax.R ade4/R/lingoes.R ade4/R/orthobasis.R ade4/R/score.acm.R ade4/R/witwit.R ade4/R/fourthcorner2.R ade4/R/RV.rtest.R ade4/R/s.label.R ade4/R/dist.dudi.R ade4/R/witwitsepan.R ade4/R/sco.class.R ade4/R/s.corcircle.R ade4/R/kdist2ktab.R ade4/R/fourthcorner.R ade4/R/add.scatter.R ade4/R/kplot.R ade4/R/orthogram.R ade4/R/dotchart.phylog.R ade4/R/amova.R ade4/R/supcol.R ade4/R/betweencoinertia.R ade4/R/ktab.within.R ade4/R/s.value.R ade4/R/sco.boxplot.R ade4/R/pcoscaled.R ade4/R/randtest.coinertia.R ade4/R/procuste.R ade4/R/rtest.between.R ade4/R/pta.R ade4/R/kplot.mfa.R ade4/R/nipals.R ade4/R/gearymoran.R ade4/R/randboot.R ade4/R/optimEH.R ade4/R/fourthcorner.rlq.R ade4/R/s.hist.R ade4/R/quasieuclid.R ade4/R/score.R ade4/R/s.multinom.R ade4/R/scatter.acm.R ade4/R/within.R ade4/R/gridrowcol.R ade4/R/table.paint.R ade4/R/bca.rlq.R ade4/R/mbpls.R ade4/R/table.value.R ade4/R/scalewt.R ade4/R/niche.R ade4/R/utilities.R ade4/R/area.plot.R ade4/R/table.phylog.R ade4/R/ktab.R ade4/R/withincoinertia.R ade4/R/multispati.randtest.R ade4/R/mdpcoa.R ade4/R/s.arrow.R ade4/R/randtest.amova.R ade4/R/disc.R ade4/R/table.dist.R ade4/R/randtest.rlq.R ade4/R/neig.R ade4/R/dudi.hillsmith.R ade4/R/dudi.acm.R ade4/R/symbols.phylog.R ade4/R/dudi.dec.R ade4/R/mstree.R ade4/R/wca.rlq.R ade4/R/score.pca.R ade4/R/RVdist.randtest.R ade4/R/randtest.cca.R ade4/R/sco.distri.R ade4/R/rtest.R ade4/R/sco.label.R ade4/R/bicenter.wt.R ade4/R/originality.R ade4/R/procuste.rtest.R ade4/R/orisaved.R ade4/R/p.adjust.4thcorner.R ade4/R/dudi.nsc.R ade4/R/cca.R ade4/R/mantel.randtest.R ade4/R/randtest.pcaivortho.R ade4/R/mantel.rtest.R ade4/R/krandxval.R ade4/R/dotcircle.R ade4/R/costatis.R ade4/R/ktab.match2ktabs.R ade4/R/is.euclid.R ade4/R/rtest.discrimin.R ade4/R/PI2newick.R ade4/R/kdisteuclid.R ade4/R/pcaivortho.R ade4/R/plot.4thcorner.R ade4/R/krandtest.R ade4/R/randtest.R ade4/R/scatter.coa.R ade4/R/pcaiv.R ade4/R/between.R ade4/R/mbpcaiv.R ade4/R/statico.R ade4/R/scatterutil.R ade4/R/dudi.coa.R ade4/R/EH.R ade4/R/kdist.R ade4/R/divc.R ade4/R/coinertia.R ade4/R/scatter.dudi.R ade4/R/kplot.foucart.R ade4/R/dist.genet.R ade4/R/discrimin.R ade4/R/discrimin.coa.R ade4/R/combine.4thcorner.R ade4/R/testdim.R ade4/R/apqe.R ade4/R/dist.neig.R ade4/R/dist.prop.R ade4/R/sco.quant.R ade4/R/triangle.class.R ade4/R/ktab.list.df.R ade4/R/s.match.class.R ade4/R/kplot.pta.R ade4/R/scatter.fca.R ade4/R/ktab.list.dudi.R ade4/R/scatter.R ade4/R/corkdist.R ade4/R/mfa.R ade4/R/kplot.sepan.R ade4/R/triangle.plot.R ade4/R/phylog.R ade4/R/s.match.R ade4/R/dist.binary.R ade4/R/score.mix.R ade4/R/kplot.mcoa.R ade4/R/dudi.pco.R ade4/R/variance.phylog.R ade4/R/plot.phylog.R ade4/R/fuzzygenet.R ade4/R/mld.R ade4/R/statis.R ade4/R/cailliez.R ade4/R/betwitdpcoa.R ade4/R/withinpca.R ade4/R/reconst.R ade4/R/newick2phylog.R ade4/R/suprow.R ade4/R/randtest-internal.R ade4/R/s.image.R ade4/R/inertia.dudi.R ade4/R/ktab.data.frame.R ade4/R/multispati.rtest.R ade4/R/randtest.discrimin.R ade4/R/multispati.R ade4/R/s.class.R ade4/R/print.4thcorner.R ade4/R/dpcoa.R ade4/R/procuste.randtest.R ade4/R/as.taxo.R ade4/R/s.kde2d.R ade4/R/summary.4thcorner.R ade4/R/kplot.statis.R ade4/R/genet.R ade4/R/randtest.pcaiv.R ade4/R/table.cont.R
ade4/MD5
ade4/DESCRIPTION
ade4/ChangeLog
ade4/man
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ade4/man/sco.gauss.Rd ade4/man/casitas.Rd ade4/man/atlas.Rd ade4/man/vegtf.Rd ade4/man/aminoacyl.Rd ade4/man/s.multinom.Rd ade4/man/bsetal97.Rd ade4/man/costatis.randtest.Rd ade4/man/testdim.Rd ade4/man/sco.quant.Rd ade4/man/kdist2ktab.Rd ade4/man/multiblock.Rd ade4/man/scatter.fca.Rd ade4/man/ade4-internal.Rd ade4/man/fourthcorner.Rd ade4/man/presid2002.Rd ade4/man/fuzzygenet.Rd

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