bacteria: Genomes of 43 Bacteria

In ade4: Analysis of Ecological Data: Exploratory and Euclidean Methods in Environmental Sciences

Genomes of 43 Bacteria

Description

bacteria is a list containing 43 species and genomic informations : codons, amino acid and bases.

Usage

data(bacteria)

Format

This list contains the following objects:

code

is a factor with the amino acid names for each codon.

espcodon

is a data frame 43 species 64 codons.

espaa

is a data frame 43 species 21 amino acid.

espbase

is a data frame 43 species 4 bases.

Source

Data prepared by J. Lobry [e-mail] starting from https://www.jcvi.org/.

Examples

data(bacteria)
names(bacteria$espcodon)
names(bacteria$espaa)
names(bacteria$espbase)
sum(bacteria$espcodon) # 22,619,749 codons

if(adegraphicsLoaded()) {
  g <- scatter(dudi.coa(bacteria$espcodon, scann = FALSE), 
    posi = "bottomleft")
} else {
  scatter(dudi.coa(bacteria$espcodon, scann = FALSE), 
    posi = "bottom")
}

ade4 documentation built on Feb. 16, 2023, 7:58 p.m.