atya: Genetic variability of Cacadors

In ade4: Analysis of Ecological Data: Exploratory and Euclidean Methods in Environmental Sciences

Genetic variability of Cacadors

Description

This data set contains information about genetic variability of Atya innocous and Atya scabra in Guadeloupe (France).

Usage

data(atya)

Format

atya is a list with the following components:

xy

a data frame with the coordinates of the 31 sites

gen

a data frame with 22 variables collected on 31 sites

neig

an object of class neig

nb

a neighborhood object (class nb defined in package spdep)

Source

Fievet, E., Eppe, F. and Dolédec, S. (2001) Etude de la variabilité morphométrique et génétique des populations de Cacadors (Atya innocous et Atya scabra) de l'île de Basse-Terre. Direction Régionale de L'Environnement Guadeloupe, Laboratoire des hydrosystèmes fluviaux, Université Lyon 1.

Examples

## Not run: 
data(atya)
if(requireNamespace("pixmap", quietly = TRUE)) {
  atya.digi <- pixmap::read.pnm(system.file("pictures/atyadigi.pnm",
      package = "ade4"))
  atya.carto <- pixmap::read.pnm(system.file("pictures/atyacarto.pnm",
      package = "ade4"))
  par(mfrow = c(1, 2))
  pixmap:::plot(atya.digi)
  pixmap:::plot(atya.carto)
  points(atya$xy, pch = 20, cex = 2)
}
if(requireNamespace("spdep", quietly = TRUE)) {
  plot(neig2nb(atya$neig), atya$xy, col = "red", add = TRUE, lwd = 2)
  par(mfrow = c(1,1))
}

## End(Not run)

ade4 documentation built on Feb. 16, 2023, 7:58 p.m.