abouheif.eg: Phylogenies and quantitative traits from Abouheif

In ade4: Analysis of Ecological Data: Exploratory and Euclidean Methods in Environmental Sciences

Phylogenies and quantitative traits from Abouheif

Description

This data set gathers three phylogenies with three sets of traits as reported by Abouheif (1999).

Usage

data(abouheif.eg)

Format

abouheif.eg is a list containing the 6 following objects :

tre1

is a character string giving the first phylogenetic tree made up of 8 leaves.

vec1

is a numeric vector with 8 values.

tre2

is a character string giving the second phylogenetic tree made up of 7 leaves.

vec2

is a numeric vector with 7 values.

tre3

is a character string giving the third phylogenetic tree made up of 15 leaves.

vec3

is a numeric vector with 15 values.

Source

Data taken from the phylogenetic independence program developped by Ehab Abouheif

References

Abouheif, E. (1999) A method for testing the assumption of phylogenetic independence in comparative data. Evolutionary Ecology Research, 1, 895–909.

Examples

data(abouheif.eg)
par(mfrow=c(2,2))
symbols.phylog(newick2phylog(abouheif.eg$tre1), abouheif.eg$vec1,
 sub = "Body Mass (kg)", csi = 2, csub = 2)
symbols.phylog(newick2phylog(abouheif.eg$tre2), abouheif.eg$vec2,
 sub = "Body Mass (kg)", csi = 2, csub = 2)
dotchart.phylog(newick2phylog(abouheif.eg$tre1), abouheif.eg$vec1,
 sub = "Body Mass (kg)", cdot = 2, cnod = 1, possub = "topleft",
  csub = 2, ceti = 1.5)
dotchart.phylog(newick2phylog(abouheif.eg$tre2), abouheif.eg$vec2,
 sub = "Body Mass (kg)", cdot = 2, cnod = 1, possub = "topleft",
  csub = 2, ceti = 1.5)
par(mfrow = c(1,1))

w.phy=newick2phylog(abouheif.eg$tre3)
dotchart.phylog(w.phy,abouheif.eg$vec3, clabel.n = 1)

ade4 documentation built on Feb. 16, 2023, 7:58 p.m.