getSamplesWithAutosomalTrisomy: Getting all samples classified as a certain autosomal trisomy

In bexy: Visualize and Parse the Output of 'BeXY'

Getting all samples classified as a certain autosomal trisomy

Description

Getting all samples classified as a certain autosomal trisomy

Usage

getSamplesWithAutosomalTrisomy(object, scaffoldName, threshold_certainty = 0.9)

Arguments

object	A bexy object.
scaffoldName	The scaffold name, must be an autosome.
threshold_certainty	The threshold for certainty on the posterior probabilities. All samples that have a posterior probability less than this threshold are classified as 'uncertain'.

Value

A character vector containing all sample names that are classified as having an autosomal trisomy of scaffold 'scaffoldName'

See Also

bexy

Examples

bex <- bexy()
getSamplesWithAutosomalTrisomy(bex, "21")

bexy documentation built on Sept. 11, 2024, 5:50 p.m.