plotTernary: Plotting the ternary of a bexy object

In bexy: Visualize and Parse the Output of 'BeXY'

Plotting the ternary of a bexy object

Description

Plotting the ternary of a bexy object

Usage

plotTernary(
  x,
  colors = c("turquoise3", "darkorange", "royalblue4"),
  sampleNamesToHighlight = c(),
  label = TRUE,
  addSquares = TRUE,
  ...
)

Arguments

x	A bexy object.
colors	A vector of length three with the colors for aneuploid, XX and XY samples, respectively.
sampleNamesToHighlight	A vector of sample names that should be highlighted. If empty, samples are automatically highlighted based on the posterior probabilities.
label	Boolean indicating whether samples should be labeled.
addSquares	Boolean indicating whether 7-cell posterior probability square plots should be drawn.
...	Other parameters used for plotting.

Value

No return value, called for side effects.

See Also

bexy

Examples

bex <- bexy()
plotTernary(bex)

bexy documentation built on Sept. 11, 2024, 5:50 p.m.