plotBars: Plotting a barplot with the posterior probabilities of each...

In bexy: Visualize and Parse the Output of 'BeXY'

Plotting a barplot with the posterior probabilities of each sex karyotype per sample

Description

Plotting a barplot with the posterior probabilities of each sex karyotype per sample

Usage

plotBars(
  x,
  colors = c("lightblue", "lightpink", "khaki", "maroon1", "dodgerblue3", "red4", "navy"),
  maxNumSamplesPerPlot = 100,
  sortByKaryotype = TRUE,
  sampleNames = c(),
  ...
)

Arguments

x	A bexy object.
colors	A vector of length 7 with the colors for XY, XX, X0, XXY, XYY, XXX and XXYY, respectively.
maxNumSamplesPerPlot	How many samples to place next to each other into one barplot. If there are more samples, multiple barplots will be generated. This is to ensure that the labels are readable.
sortByKaryotype	If TRUE, the samples (i.e. the bars) are ordered by the posterior mode of the sex karyotype.
sampleNames	A vector of sample names that represents the order in which the bars are plotted. Overrides any argument given to sortByKaryotype.
...	Other parameters used for plotting.

Value

No return value, called for side effects.

See Also

bexy

Examples

bex <- bexy()
plotBars(bex)

bexy documentation built on Sept. 11, 2024, 5:50 p.m.