biclust: BiCluster Algorithms

The main function biclust provides several algorithms to find biclusters in two-dimensional data: Cheng and Church, Spectral, Plaid Model, Xmotifs and Bimax. In addition, the package provides methods for data preprocessing (normalization and discretisation), visualisation, and validation of bicluster solutions.

AuthorSebastian Kaiser, Rodrigo Santamaria, Tatsiana Khamiakova, Martin Sill, Roberto Theron, Luis Quintales, Friedrich Leisch and Ewoud De Troyer.
Date of publication2015-05-12 11:44:19
MaintainerSebastian Kaiser <Sebastian.Kaiser@stat.uni-muenchen.de>
LicenseGPL-3
Version1.2.0

View on CRAN

Files in this package

biclust
biclust/COPYING
biclust/src
biclust/src/rbimax.c
biclust/NAMESPACE
biclust/NEWS
biclust/data
biclust/data/EisenYeast.rda
biclust/data/SyntrenEcoli.rda
biclust/data/BicatYeast.rda
biclust/data/datalist
biclust/R
biclust/R/binarize.r
biclust/R/questmotif.r
biclust/R/writeBiclusterResults.r
biclust/R/plaid.r
biclust/R/bubbleplot.r
biclust/R/xmotif.r
biclust/R/bicorder.r
biclust/R/postprocessing.r
biclust/R/clustmember.r
biclust/R/questordmotif.r
biclust/R/bicluster.r
biclust/R/aaa-biclust.r
biclust/R/predict.r
biclust/R/coherence.r
biclust/R/drawHeatmap2.r
biclust/R/drawHeatmap.r
biclust/R/spectral.r
biclust/R/parallelCoordinates.r
biclust/R/jaccard.r
biclust/R/isoverlapp.r
biclust/R/bimax.r
biclust/R/ensemble.R
biclust/R/normalization.r
biclust/R/heatmap.r
biclust/R/iterativekmeans.r
biclust/R/questmetmotif.r
biclust/R/DiagnosticsFunctions.R
biclust/R/helpers.r
biclust/R/logical2sparse.r
biclust/R/biclustbarchart.r
biclust/R/cc.r
biclust/MD5
biclust/DESCRIPTION
biclust/man
biclust/man/Biclust.rd
biclust/man/jaccard.rd
biclust/man/drawHeatmap.Rd biclust/man/SyntrenEcoli.Rd
biclust/man/BCCC.rd
biclust/man/bimax.grid.Rd
biclust/man/biclust-method.rd
biclust/man/diagnoseColRow.Rd
biclust/man/clustmember.rd
biclust/man/bicluster.rd
biclust/man/writeclust.rd
biclust/man/heatmapBC.Rd biclust/man/binarize.Rd biclust/man/BCPlaid.Rd
biclust/man/isoverlapp.rd
biclust/man/bubbleplot.Rd biclust/man/coherence.Rd
biclust/man/plotclust.rd
biclust/man/ChiaKaruturi.Rd biclust/man/BicatYeast.Rd
biclust/man/BCBimax.rd
biclust/man/BiclustMethod.rd
biclust/man/BCQuest.rd
biclust/man/EisenYeast.Rd biclust/man/ensemble.Rd biclust/man/parallelCoordinates.Rd
biclust/man/predict.rd
biclust/man/biclustbarchart.rd
biclust/man/computeObservedFstat.Rd biclust/man/diagnosticPlot.Rd
biclust/man/discretize.rd
biclust/man/BCSpectral.Rd
biclust/man/BCXmotifs.rd
biclust/man/writeBiclusterResults.Rd biclust/man/plaid.grid.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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