BCCC: The CC Bicluster algorithm

In biclust: BiCluster Algorithms

The CC Bicluster algorithm

Description

Performs CC Biclustering based on the framework by Cheng and Church (2000). Searches for submatrices with a score lower than a specific treshold in a standardized data matrix.

Usage

## S4 method for signature 'matrix,BCCC'
biclust(x, method=BCCC(), delta = 1.0, alpha=1.5, number=100)

Arguments

x	Data matrix.
method	Here BCCC, to perform CC algorithm
delta	Maximum of accepted score.
alpha	Scaling factor.
number	Number of bicluster to be found.

Value

Returns an object of class Biclust.

Author(s)

Sebastian Kaiser [e-mail]

References

Cheng, Y. & Church, G.M. Biclustering of Expression Data Proceedings of the Eighth International Conference on Intelligent Systems for Molecular Biology, 2000, 1, 93-103

See Also

biclust, Biclust

Examples

test <- matrix(rbinom(400, 50, 0.4), 20, 20)
res <- biclust(test, method=BCCC(), delta=1.5,  alpha=1, number=10)
res

biclust documentation built on May 31, 2023, 6:18 p.m.