writeBiclusterResults: writeBiclusterResults

In biclust: BiCluster Algorithms

writeBiclusterResults

Description

Write bicluster results to a file

Usage

writeBiclusterResults(fileName, bicResult, bicName, geneNames, arrayNames,
  append=FALSE, delimiter=" ")

Arguments

fileName	Path to the file were biclusters are written.
bicResult	Biclusters results as a Biclust class.
bicName	Brief description for the biclustering algorithm used.
geneNames	Array of strings with gene (row) names in the analyzed data matrix
arrayNames	Array of strings with condition (column) names in the analyzed data matrix
append	If true, adds the bicluster results to previous information in the text file, if it exists. Default false.
delimiter	delimiter string between gene and condition names. Default " ".

Author(s)

Rodrigo Santamaria [e-mail]

Examples

## Not run: 
  data(BicatYeast)
  res <- biclust(BicatYeast, method=BCCC(), delta=1.5,  alpha=1, number=10)
  writeBiclusterResults("results.txt", res,"CC with delta 1.5", dimnames(BicatYeast)[1][[1]],
    dimnames(BicatYeast)[2][[1]])
  
## End(Not run)
  

biclust documentation built on May 31, 2023, 6:18 p.m.