BCQuest: The Questmotif Bicluster algorithm

In biclust: BiCluster Algorithms

The Questmotif Bicluster algorithm

Description

Performs Questmotif Biclustering a Bicluster algorithm for questionairs based on the framework by Murali and Kasif (2003). Searches subgroups of questionairs with same or similar answer to some questions.

Usage

## S4 method for signature 'matrix,BCQuest'
biclust(x, method=BCQuest(), ns=10, nd=10, sd=5, alpha=0.05, number=100)
## S4 method for signature 'matrix,BCQuestord'
biclust(x, method=BCQuestord(), d=1, ns=10, nd=10, sd=5, alpha=0.05, number=100)
## S4 method for signature 'matrix,BCQuestmet'
biclust(x, method=BCQuestmet(), quant=0.25, vari=1, ns=10, nd=10, sd=5, 
  alpha=0.05, number=100)

Arguments

x	Data Matrix.
method	Here BCQuest, to perform Questmotif algorithm
ns	Number of questions choosen.
nd	Number of repetitions.
sd	Sample size in repetitions.
alpha	Scaling factor for column result.
number	Number of bicluster to be found.
d	Half margin of intervall question values should be in (Intervall is mean-d,mean+d).
quant	Which quantile to use on metric data
vari	Which varianz to use for metric data

Value

Returns an object of class Biclust.

Extends

Class "BiclustMethod", directly.

Author(s)

Sebastian Kaiser [e-mail]

References

Murali, T. & Kasif, S. Extracting Conserved Gene Expression Motifs from Gene Expression Data Pacific Symposium on Biocomputing, sullivan.bu.edu, 2003, 8, 77-88

See Also

biclust, Biclust

biclust documentation built on May 31, 2023, 6:18 p.m.