heatmapBC: Overlapping Heatmap

In biclust: BiCluster Algorithms

Overlapping Heatmap

Description

Other than drawHeatmap this function plots all or a chosen number of bicluster in one plot even if they were overlapping.

Usage

heatmapBC(x, bicResult, number = 0, local = TRUE, order = FALSE, 
          outside = FALSE, ...)

Arguments

x	The data matrix where the bicluster is to be drawn.
bicResult	BiclustResult object with a bicluster result set.
number	Number of bicluster to be drawn from the result set 'bicResult'. If the default 0 is chosen all bicluster of the bicResult are drawn.
local	If TRUE, only rows and columns of the bicluster are drawn. This argument is only used if number is not set to 0.
order	If TRUE, rows and columns are ordered by their values.
outside	If TRUE, Boxes are drawn for overlapping
...	Additional plot options

Details

Overlap plotting only works for two neighbor bicluster defined by the order in the number slot.

Author(s)

Sebastian Kaiser

See Also

drawHeatmap,parallelCoordinates

Examples

  set.seed(1234)
  data(BicatYeast)
  resplaid <- biclust(BicatYeast, BCPlaid(), verbose = FALSE)
  heatmapBC(x = BicatYeast, bicResult = resplaid)

biclust documentation built on May 31, 2023, 6:18 p.m.