Files in bulkAnalyseR
Interactive Shiny App for Bulk Sequencing Data
MD5
README.md
NAMESPACE
DESCRIPTION
R/patternFuns.R
R/DEplotFuns.R
R/generateShinyApp.R
R/utils-pipe.R
R/GRNTransPanel.R
R/sampleSelectPanel.R
R/QCplotFuns.R
R/QCpanel.R
R/GRNCisPanel.R
R/DEplotPanel.R
R/DEsummaryPanel.R
R/preprocessExpressionMatrix.R
R/GRNCustomPanel.R
R/GRNfuns.R
R/DEpanel.R
R/modalityPanel.R
R/patternPanel.R
R/preprocess_miRTarBase.R
R/crossPanel.R
R/GRNpanel.R
R/DEsummaryFuns.R
R/enrichmentPanel.R
R/landingPanel.R
R/cross_plot.R
R/DEfuns.R
inst/doc/GEO_App.Rmd
inst/doc/GEO_App.html
inst/doc/IntegratingMultiomics.R
inst/doc/bulkAnalyseR.R
inst/doc/IntegratingMultiomics.html
inst/doc/GEO_App.R
inst/doc/IntegratingMultiomics.Rmd
inst/doc/bulkAnalyseR.html
inst/doc/bulkAnalyseR.Rmd
inst/extdata/expression_matrix_preprocessed.csv
inst/extdata/expression_matrix.csv
inst/extdata/mmu_MTI_sub.xls
build/vignette.rds
tests/testthat.R
tests/testthat/test-GRNfuns.R
vignettes/GEO_App.Rmd
vignettes/IntegratingMultiomics.Rmd
vignettes/bulkAnalyseR.Rmd
vignettes/figures/JSI.png
vignettes/figures/GRN.png
vignettes/figures/ScreenShot.png
vignettes/figures/ExpressionHeatmap.png
vignettes/figures/CisIntegrationExample.png
vignettes/figures/MAPlot.png
vignettes/figures/MA_QC.png
vignettes/figures/CustomIntegrationExample.png
vignettes/figures/NoisyRPlot.png
vignettes/figures/PCA.png
vignettes/figures/workflow.png
vignettes/figures/VolcanoPlot.png
vignettes/figures/TransIntegrationExample.png
vignettes/figures/DE.png
vignettes/figures/EnrichmentIntegrationExample.png
vignettes/figures/SampleSelect.png
vignettes/figures/ExpressionPatternsLinePlot.png
vignettes/figures/ExpressionPatternsHeatmap.png
vignettes/figures/Enrichment.png
vignettes/figures/PCA_DE.png
vignettes/figures/ExpressionPatterns.png
vignettes/figures/CrossPlot.png
man/plot_line_pattern.Rd
man/genes_barplot.Rd
man/enrichmentPanel.Rd
man/preprocessExpressionMatrix.Rd
man/DEpanel.Rd
man/jaccard_index.Rd
man/ma_plot.Rd
man/scatter_plot.Rd
man/determine_uds.Rd
man/infer_GRN.Rd
man/landingPanel.Rd
man/DEplotPanel.Rd
man/plot_pca.Rd
man/modalityPanel.Rd
man/calculate_condition_mean_sd_per_gene.Rd
man/jaccard_heatmap.Rd
man/find_regulators_with_recurring_edges.Rd
man/DEanalysis.Rd
man/GRNCisPanel.Rd
man/DEsummaryPanel.Rd
man/rescale_matrix.Rd
man/volcano_plot.Rd
man/GRNpanel.Rd
man/preprocess_miRTarBase.Rd
man/QCpanel.Rd
man/make_heatmap_matrix.Rd
man/qc_violin_plot.Rd
man/qc_density_plot.Rd
man/pipe.Rd
man/noisyr_counts_with_plot.Rd
man/crossPanel.Rd
man/expression_heatmap.Rd
man/generateShinyApp.Rd
man/cross_plot.Rd
man/GRNCustomPanel.Rd
man/get_link_list_rename.Rd
man/GRNTransPanel.Rd
man/patternPanel.Rd
man/plot_GRN.Rd
man/make_pattern_matrix.Rd
man/sampleSelectPanel.Rd
man/plot_upset.Rd
