norm_pheno: Mean-center and normalize phenotypes

In cape: Combined Analysis of Pleiotropy and Epistasis for Diversity Outbred Mice

Mean-center and normalize phenotypes

Description

This function is a wrapper for mean-centering normalizing and standardizing the trait matrix. in a data_obj.

Usage

norm_pheno(data_obj, mean_center = TRUE)

Arguments

data_obj	a Cape object mean_center a logical value indicating whether the traits should be mean centered. If FALSE, the traits are only normalized.
mean_center	mean center

Value

the data object is returned. The pheno slot of the data object will have normalized and/or mean-centered traits. The function also preserves the original trait matrix in a slot called raw_pheno.

Examples

## Not run: 
data_obj <- norm_pheno(data_obj)

## End(Not run)

cape documentation built on May 20, 2022, 1:06 a.m.