plot_lines: Plot interaction plot for traits and genetic markers
In cape: Combined Analysis of Pleiotropy and Epistasis for Diversity Outbred Mice

plot_lines

R Documentation

Plot interaction plot for traits and genetic markers

Description

This internal function is called by plot.effects to generate an interaction plot for two markers relating to a trait. If marker2_vals is NULL, the function instead shows the main effect for marker1.

Usage

plot_lines(
  phenoV,
  marker1_vals,
  marker2_vals = NULL,
  pheno_name,
  marker1_label,
  marker2_label,
  ymin = NULL,
  ymax = NULL,
  error_bars
)

Arguments

`phenoV`	A vector of trait values
`marker1_vals`	A vector of genotype values for marker1
`marker2_vals`	A vector of genotype values for marker2.
`pheno_name`	A string indicating the name of the trait being plotted.
`marker1_label`	A string indicating the name of marker1
`marker2_label`	A string indicating the name of marker2
`ymin`	A numeric value indicating the minimum y value for the plot. If NULL, it will be calculated based on phenoV and error bars.
`ymax`	A numeric value indicating the maximum y value for the plot. If NULL, it will be calculated based on phenoV and error bars.
`error_bars`	A string indicating the type of error bars to draw. Can be "sd" for standard deviation, "se" for standard error, or "none".