plot_pheno_cor: Plot trait pairs against each other
In cape: Combined Analysis of Pleiotropy and Epistasis for Diversity Outbred Mice

plot_pheno_cor

R Documentation

Plot trait pairs against each other

This function plots pairs of traits against each other to visualize the correlations between traits.

plot_pheno_cor(
  data_obj,
  pheno_which = NULL,
  color_by = NULL,
  group_labels = NULL,
  text_cex = 1,
  pheno_labels = NULL,
  pt_cex = 1
)

`data_obj`	a `Cape` object
`pheno_which`	A vector of trait names to plot. The default is to plot all traits.
`color_by`	A character string indicating a value to color the traits by, for example sex or treatment. It must be one of the covariates. See `pheno2covar`.
`group_labels`	A vector of names for the legend indicating the groups for the colored dots.
`text_cex`	A numeric value indicating the size of the text
`pheno_labels`	A vector of names for traits to appear in the plot in case the column names are not very pretty.
`pt_cex`	A numeric value indicating the size of the points.