plot_pheno_cor: Plot trait pairs against each other

In cape: Combined Analysis of Pleiotropy and Epistasis for Diversity Outbred Mice

Plot trait pairs against each other

Description

This function plots pairs of traits against each other to visualize the correlations between traits.

Usage

plot_pheno_cor(
  data_obj,
  pheno_which = NULL,
  color_by = NULL,
  group_labels = NULL,
  text_cex = 1,
  pheno_labels = NULL,
  pt_cex = 1
)

Arguments

data_obj	a Cape object
pheno_which	A vector of trait names to plot. The default is to plot all traits.
color_by	A character string indicating a value to color the traits by, for example sex or treatment. It must be one of the covariates. See pheno2covar.
group_labels	A vector of names for the legend indicating the groups for the colored dots.
text_cex	A numeric value indicating the size of the text
pheno_labels	A vector of names for traits to appear in the plot in case the column names are not very pretty.
pt_cex	A numeric value indicating the size of the points.

Examples

## Not run: 
plot_pheno_cor(data_obj, color_by = "sex", group_labels = c("Female", "Male"))

## End(Not run)

cape documentation built on May 20, 2022, 1:06 a.m.