Nothing
set.seed(1234)
library(cape)
results_path <- here::here("demo", "demo_qtl")
data_path <- here::here("tests", "testthat", "testdata", "demo_qtl_data")
data_file <- file.path(data_path, "NON_NZO_Reifsnyder_pgm_CAPE_num.csv")
param_file <- file.path(results_path, "NON_NZO.parameters.yml")
cross <- read_population(data_file)
cross_obj <- cape2mpp(cross)
data_obj <- cross_obj$data_obj
geno_obj <- cross_obj$geno_obj$geno
final_cross <- run_cape(data_obj, geno_obj, p_or_q = 0.05, verbose = TRUE,
param_file = param_file, results_path = results_path)
plot_variant_influences(final_cross)
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