| addCluster |
Source code
|
| clusterComrades |
Man page
|
| clusterComrades,comradesDataSet-method |
Man page
|
| clusterGrangesList |
Man page
|
| clusterGrangesList,comradesDataSet-method |
Man page
|
| clusterGrangesList<- |
Man page
|
| clusterGrangesList<-,comradesDataSet-method |
Man page
|
| clusterNumbers |
Man page
|
| clusterNumbers,comradesDataSet-method |
Man page
|
| clusterTableFolded |
Man page
|
| clusterTableFolded,comradesDataSet-method |
Man page
|
| clusterTableList |
Man page
|
| clusterTableList,comradesDataSet-method |
Man page
|
| clusterTableList<- |
Man page
|
| clusterTableList<-,comradesDataSet-method |
Man page
|
| compareKnown |
Man page
|
| compareKnown,comradesDataSet-method |
Man page
|
| compareKnownStructures |
Man page
|
| compareKnownStructures,comradesDataSet-method |
Man page
|
| comradesDataSet |
Man page
Source code
|
| comradesDataSet-class |
Man page
|
| comradesOO |
Man page
|
| comradesOO-package |
Man page
|
| featureInfo |
Man page
|
| featureInfo,comradesDataSet-method |
Man page
|
| findBasePairsRNAcoFold2 |
Man page
Source code
|
| findBasePairsRNAfold |
Man page
Source code
|
| findBasePairsRNAfold2 |
Man page
Source code
|
| foldComrades |
Man page
|
| foldComrades,comradesDataSet-method |
Man page
|
| getAdjacancyMat |
Man page
Source code
|
| getClusterClusterShortRangeWhole |
Man page
Source code
|
| getData |
Man page
|
| getData,comradesDataSet-method |
Man page
|
| getInteractions |
Man page
|
| getInteractions,comradesDataSet-method |
Man page
|
| getMatrices |
Man page
Source code
|
| getReverseInteractions |
Man page
|
| getReverseInteractions,comradesDataSet-method |
Man page
|
| group |
Man page
|
| group,comradesDataSet-method |
Man page
|
| hybFiles |
Man page
|
| hybFiles,comradesDataSet-method |
Man page
|
| hybToGRanges |
Man page
Source code
|
| makeExampleComradesDataSet |
Man page
Source code
|
| matrixList |
Man page
|
| matrixList,comradesDataSet-method |
Man page
|
| matrixList<- |
Man page
|
| matrixList<-,comradesDataSet-method |
Man page
|
| plotComparisonArc |
Man page
|
| plotComparisonArc,comradesDataSet-method |
Man page
|
| plotEnsemblePCA |
Man page
|
| plotEnsemblePCA,comradesDataSet-method |
Man page
|
| plotMatrices |
Man page
|
| plotMatrices,comradesDataSet-method |
Man page
|
| plotMatricesAverage |
Man page
|
| plotMatricesAverage,comradesDataSet-method |
Man page
|
| plotStructure |
Man page
|
| plotStructure,comradesDataSet-method |
Man page
|
| printClustersFast |
Man page
Source code
|
| readNumbers |
Man page
|
| readNumbers,comradesDataSet-method |
Man page
|
| rnaSize |
Man page
|
| rnaSize,comradesDataSet-method |
Man page
|
| rnas |
Man page
|
| rnas,comradesDataSet-method |
Man page
|
| sampleChimeras |
Man page
Source code
|
| sampleNames |
Man page
|
| sampleNames,comradesDataSet-method |
Man page
|
| sampleTable |
Man page
|
| sampleTable,comradesDataSet-method |
Man page
|
| subsetHybList2 |
Man page
Source code
|
| swapHybs |
Man page
Source code
|
| swapHybs2 |
Man page
Source code
|
| swapHybs3 |
Man page
Source code
|
| topInteracters |
Man page
|
| topInteracters,comradesDataSet-method |
Man page
|
| topInteractions |
Man page
|
| topInteractions,comradesDataSet-method |
Man page
|
| topTranscripts |
Man page
|
| topTranscripts,comradesDataSet-method |
Man page
|
| trimClusters |
Man page
|
| trimClusters,comradesDataSet-method |
Man page
|
