subsetHybList2: subsetHybList2

In comradesOO: Analysis of COMRADES (Cross-Linking Matched RNA and Deep Sequencing) Data

subsetHybList2

Description

Subset a list of hyb files

Usage

subsetHybList2(hybList, min, max, length)

Arguments

hybList	the original hybList created with readHybFiles
min	the rna of interest that you want to subset
max	The number of randomly subsetted chimeric reads you need
length	The number of randomly subsetted chimeric reads you need

Details

Function used to subset a list of hyb data created by readHybFiles This function produces the same size list as before but it returns ONLY the rna of interest and also Choose duplexes where the nt difference in position between the one side and other side of an interaction is between min and max

Value

A list of subsetted hyb files

comradesOO documentation built on Nov. 10, 2023, 5:08 p.m.