clusterComrades: clusterComrades

In comradesOO: Analysis of COMRADES (Cross-Linking Matched RNA and Deep Sequencing) Data

clusterComrades

Description

This method clusters the duplexes.

Usage

clusterComrades(cds, cores = 3, stepCount = 2, clusterCutoff = 20)

Arguments

cds	comradesDataSet object created with comradesDataSet
cores	numeric - The number of cores to use
stepCount	Stringency for clustering
clusterCutoff	The minimum number of reads a cluster requires

Value

A comradesDataSet object

Examples

cds = makeExampleComradesDataSet()

clusterComrades(cds,
                cores = 1,
                stepCount = 1,
                clusterCutoff = 0)

comradesOO documentation built on Nov. 10, 2023, 5:08 p.m.