readNumbers: readNumbers

In comradesOO: Analysis of COMRADES (Cross-Linking Matched RNA and Deep Sequencing) Data

readNumbers

Description

This method prints a table showing the number of duplexes in the clusters in each step of the analysis

Usage

readNumbers(knowClusteredCds, rna)

Arguments

knowClusteredCds	A comradesDataSet object after clustering has been performed
rna	The RNA ID of interest - use rna(cdsObject).

Value

A data.frame shoing the number of reads in clusters for each sample

Examples

cds = makeExampleComradesDataSet()

clusteredCds = clusterComrades(cds,
                cores = 1,
                stepCount = 1,
                clusterCutoff = 1)
readNumbers(clusteredCds)

comradesOO documentation built on Nov. 10, 2023, 5:08 p.m.