findBasePairsRNAfold: findBasePairsRNAfold
In comradesOO: Analysis of COMRADES (Cross-Linking Matched RNA and Deep Sequencing) Data
View source: R/foldComradesMethodsAndHelpers.R
findBasePairsRNAfold R Documentation
findBasePairsRNAfold
Description
Folds the clusters using Vienna RNA duplex
Usage
findBasePairsRNAfold(startPos, endPos, seqs, fasta, shape)
Arguments
startPos
Start of the cluster side x
endPos
End of the cluster side x
seqs
Sequence of x
fasta
rnaRefs
shape
shape reactivities
Value
A table of clusters and coordinates with folds
comradesOO documentation built on Nov. 10, 2023, 5:08 p.m.
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View source: R/foldComradesMethodsAndHelpers.R
| findBasePairsRNAfold | R Documentation |
findBasePairsRNAfold
Description
Folds the clusters using Vienna RNA duplex
Usage
findBasePairsRNAfold(startPos, endPos, seqs, fasta, shape)
Arguments
startPos |
Start of the cluster side x |
endPos |
End of the cluster side x |
seqs |
Sequence of x |
fasta |
|
shape |
shape reactivities |
Value
A table of clusters and coordinates with folds
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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