Files in comradesOO
Analysis of COMRADES (Cross-Linking Matched RNA and Deep Sequencing) Data
MD5
README.md
NAMESPACE
DESCRIPTION
R/foldComradesMethodsAndHelpers.R
R/clusterComradesMethodsAndHelpers.R
R/comradesOO.R
R/genericMethods.R
R/foldComrades.R
R/commonStatsAndPlots.R
R/comradesDataSetMethodsAndHelpers.R
R/comradesOO-package.R
R/commonHelpersAndMethods.R
R/comradesDataSet.R
R/clusterComrades.R
inst/CITATION
inst/doc/comradesOO.Rmd
inst/doc/comradesOO.R
inst/doc/comradesOO.html
inst/extdata/reactivities.txt
inst/extdata/ribovision18S.txt
inst/extdata/c1.txt
inst/extdata/18S.fasta
inst/extdata/s1.txt
build/vignette.rds
tests/testthat.R
vignettes/comradesOO.Rmd
vignettes/vigentte_pca.jpg
vignettes/vignette_domain.jpg
vignettes/vigentte_arc.jpg
vignettes/comradesProtocol.jpg
vignettes/schematic.jpg
vignettes/inputFileSchematic.jpg
vignettes/constraints.txt
man/sampleChimeras.Rd
man/clusterTableFolded.Rd
man/getAdjacancyMat.Rd
man/clusterTableList_set.Rd
man/getReverseInteractions.Rd
man/hybToGRanges.Rd
man/sampleTable.Rd
man/getClusterClusterShortRangeWhole.Rd
man/readNumbers.Rd
man/printClustersFast.Rd
man/hybFiles.Rd
man/rnaSize.Rd
man/clusterGrangesList_set.Rd
man/plotComparisonArc.Rd
man/compareKnownStructures.Rd
man/clusterComrades.Rd
man/clusterTableList.Rd
man/topTranscripts.Rd
man/comradesDataSet.Rd
man/clusterNumbers.Rd
man/swapHybs.Rd
man/comradesOO.Rd
man/compareKnown.Rd
man/swapHybs2.Rd
man/plotMatrices.Rd
man/findBasePairsRNAfold2.Rd
man/rnas.Rd
man/getInteractions.Rd
man/topInteractions.Rd
man/trimClusters.Rd
man/clusterGrangesList.Rd
man/topInteracters.Rd
man/sampleNames.Rd
man/plotEnsemblePCA.Rd
man/subsetHybList2.Rd
man/featureInfo.Rd
man/foldComrades.Rd
man/findBasePairsRNAfold.Rd
man/swapHybs3.Rd
man/getData.Rd
man/matrixList.Rd
man/plotMatricesAverage.Rd
man/makeExampleComradesDataSet.Rd
man/matrixList_set.Rd
man/group.Rd
man/getMatrices.Rd
man/findBasePairsRNAcoFold2.Rd
man/plotStructure.Rd
