Man pages for comradesOO
Analysis of COMRADES (Cross-Linking Matched RNA and Deep Sequencing) Data
| clusterComrades | clusterComrades |
| clusterGrangesList | clusterGrangesList |
| clusterGrangesList_set | clusterGrangesList<- |
| clusterNumbers | clusterNumbers |
| clusterTableFolded | clusterTableFolded |
| clusterTableList | clusterTableList |
| clusterTableList_set | clusterTableList<- |
| compareKnown | compareKnown |
| compareKnownStructures | compareKnownStructures |
| comradesDataSet | comradesDataSet |
| comradesOO | comradesOO: A package for analysing a COMRADES dataset |
| featureInfo | featureInfo |
| findBasePairsRNAcoFold2 | findBasePairsRNAcoFold2 |
| findBasePairsRNAfold | findBasePairsRNAfold |
| findBasePairsRNAfold2 | findBasePairsRNAfold2 |
| foldComrades | foldComrades |
| getAdjacancyMat | getAdjacancyMat |
| getClusterClusterShortRangeWhole | getClusterClusterShortRangeWhole |
| getData | getData |
| getInteractions | getInteractions |
| getMatrices | getMatrices |
| getReverseInteractions | getReverseInteractions |
| group | group |
| hybFiles | hybFiles |
| hybToGRanges | hybToGRanges |
| makeExampleComradesDataSet | makeExampleComradesDataSet |
| matrixList | matrixList |
| matrixList_set | matrixList |
| plotComparisonArc | plotComparisonArc |
| plotEnsemblePCA | plotEnsemblePCA |
| plotMatrices | Plots a number of contact maps to file of each sample for a... |
| plotMatricesAverage | plotMatricesAverage |
| plotStructure | plotStructure |
| printClustersFast | printClustersFast |
| readNumbers | readNumbers |
| rnas | rnas |
| rnaSize | rnaSize |
| sampleChimeras | sampleChimeras |
| sampleNames | sampleNames |
| sampleTable | sampleTable |
| subsetHybList2 | subsetHybList2 |
| swapHybs | swapHybs |
| swapHybs2 | swapHybs2 |
| swapHybs3 | swapHybs3 |
| topInteracters | topInteracters |
| topInteractions | topInteractions |
| topTranscripts | topTranscripts |
| trimClusters | trimClusters |
