Files in countland

Analysis of Biological Count Data, Especially from Single-Cell RNA-Seq

NEWS.md R/countland_marker.R R/countland_subsample.R R/countland_IMA.R R/countland.R R/countland_shared_counts.R R/countland_embed.R R/countland_score.R R/countland_dot.R R/countland_cluster.R R/countland_utils.R R/countland_subset.R R/IMA.R tests/testthat.R tests/testthat/test-countland.R tests/testthat/test-countland_embed.R tests/testthat/test-countland_subset.R tests/testthat/test-countland_IMA.R tests/testthat/test-countland_cluster.R tests/testthat/test-countland_score.R tests/testthat/test-countland_shared_counts.R tests/testthat/test-countland_marker.R tests/testthat/test-countland_subsample.R tests/testthat/test-countland_dot.R man/Dot.Rd man/PlotGeneCounts.Rd man/countland.Rd man/PlotSharedCounts.Rd man/PlotMarker.Rd man/Normalize.Rd man/PlotEmbedding.Rd man/ScoreCells.Rd man/Center.Rd man/RunIMA.Rd man/IMA_params.Rd man/Subsample.Rd man/SharedCounts.Rd man/Log.Rd man/RestoreCounts.Rd man/Embed.Rd man/SubsetGenes.Rd man/PrintGeneNumber.Rd man/ScikitManifoldSpectralEmbedding.Rd man/ScoreGenes.Rd man/RankMarkerGenes.Rd man/countland-class.Rd man/PlotIMA.Rd man/CountIndex.Rd man/PlotIMAElbow.Rd man/RemoveEmpty.Rd man/IMA_Update_Factor.Rd man/IMA_Compute_Init_Scaled.Rd man/SubsampleCol.Rd man/IMA_init.Rd man/RescaleVariance.Rd man/SubsetCells.Rd man/PlotEigengap.Rd man/IMA.Rd man/listCols.Rd man/Cluster.Rd