ScoreCells: Calculate several scores for counts across cells
In countland: Analysis of Biological Count Data, Especially from Single-Cell RNA-Seq
View source: R/countland_score.R
ScoreCells R Documentation
Calculate several scores for counts across cells
Description
Calculate several scores for counts across cells
Usage
ScoreCells(C, gene_string = NULL)
Arguments
C
countland object
gene_string
string with regular expression expression matching gene names of interest (default=NULL)
Value
countland object with slot cell_scores
Examples
gold_path <- system.file("testdata", package = "countland", mustWork = TRUE)
gold.data <- Seurat::Read10X(data.dir = gold_path)
C <- countland(gold.data)
C <- ScoreCells(C,gene_string="*149932$")
countland documentation built on May 29, 2024, 7:13 a.m.
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View source: R/countland_score.R
| ScoreCells | R Documentation |
Calculate several scores for counts across cells
Description
Calculate several scores for counts across cells
Usage
ScoreCells(C, gene_string = NULL)
Arguments
C |
countland object |
gene_string |
string with regular expression expression matching gene names of interest (default=NULL) |
Value
countland object with slot cell_scores
Examples
gold_path <- system.file("testdata", package = "countland", mustWork = TRUE)
gold.data <- Seurat::Read10X(data.dir = gold_path)
C <- countland(gold.data)
C <- ScoreCells(C,gene_string="*149932$")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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