PlotIMA: Plot cells using integer matrix approximation

In countland: Analysis of Biological Count Data, Especially from Single-Cell RNA-Seq

Plot cells using integer matrix approximation

Description

Plot cells using integer matrix approximation

Usage

PlotIMA(C, x = 1, y = 2, colors = color_palette, subsample = TRUE)

Arguments

C	countland object
x	feature on x-axis, integer (default=1)
y	feature on y-axis, integer (default=2)
colors	color palette for ggplot2, default=palette of 11 colors
subsample	if TRUE, use subsampled counts (default), otherwise use counts

Value

generates plot of cells using integer matrix approximation

countland documentation built on May 29, 2024, 7:13 a.m.