PlotIMAElbow: Plot the difference between the observed and reconstructed...

In countland: Analysis of Biological Count Data, Especially from Single-Cell RNA-Seq

Plot the difference between the observed and reconstructed count matrix using integer matrix approximation and a series of total features.

Description

Plot the difference between the observed and reconstructed count matrix using integer matrix approximation and a series of total features.

Usage

PlotIMAElbow(C, max_features, u_bounds, subsample = TRUE)

Arguments

C	countland object
max_features	maximum number of features to assess, integer
u_bounds	upper bounds for U and V matrices, vector of length 2
subsample	if TRUE, use subsampled counts (default), otherwise use counts

Value

generates elbow plot for the difference between observed and reconstructed matrices as number of features increases

countland documentation built on May 29, 2024, 7:13 a.m.