SubsetCells: Subsets cells using a vector of cell indices

In countland: Analysis of Biological Count Data, Especially from Single-Cell RNA-Seq

Subsets cells using a vector of cell indices

Description

Subsets cells using a vector of cell indices

Usage

SubsetCells(C, cell_indices, remove_empty = TRUE)

Arguments

C	countland object
cell_indices	vector of cell index values
remove_empty	filter out cells and genes with no observed counts (default=TRUE)

Value

countland object, count matrix updated

Examples

gold_path <- system.file("testdata", package = "countland", mustWork = TRUE)
gold.data <- Seurat::Read10X(data.dir = gold_path)
C <- countland(gold.data)
C <- SubsetCells(C,cell_indices=1:50)

countland documentation built on May 29, 2024, 7:13 a.m.