SubsetGenes: Subsets genes using a vector of gene indices

In countland: Analysis of Biological Count Data, Especially from Single-Cell RNA-Seq

Subsets genes using a vector of gene indices

Description

Subsets genes using a vector of gene indices

Usage

SubsetGenes(C, gene_indices, remove_empty = TRUE)

Arguments

C	countland object
gene_indices	vector of gene index values
remove_empty	filter out cells and genes with no observed counts (default=TRUE)

Value

countland object, count matrix updated

Examples

gold_path <- system.file("testdata", package = "countland", mustWork = TRUE)
gold.data <- Seurat::Read10X(data.dir = gold_path)
C <- countland(gold.data)
C <- SubsetGenes(C,gene_indices=1:200)

countland documentation built on May 29, 2024, 7:13 a.m.