PlotEmbedding: Plot cells using spectral embedding of dot products.

In countland: Analysis of Biological Count Data, Especially from Single-Cell RNA-Seq

Plot cells using spectral embedding of dot products.

Description

Plot cells using spectral embedding of dot products.

Usage

PlotEmbedding(C, colors = color_palette)

Arguments

C	countland object
colors	color palette for ggplot2, default=palette of 11 colors

Value

generates plot of cells in two spectral embedding dimensions

Examples

gold_path <- system.file("testdata", package = "countland", mustWork = TRUE)
gold.data <- Seurat::Read10X(data.dir = gold_path)
C <- countland(gold.data)
C <- Dot(C)
C <- Embed(C,n_components=5)
C <- Cluster(C,n_clusters=3)
PlotEmbedding(C)

countland documentation built on May 29, 2024, 7:13 a.m.