PlotGeneCounts: Generate a strip plot for counts across selected genes

In countland: Analysis of Biological Count Data, Especially from Single-Cell RNA-Seq

Generate a strip plot for counts across selected genes

Description

Generate a strip plot for counts across selected genes

Usage

PlotGeneCounts(C, gene_indices, colors = color_palette)

Arguments

C	countland object
gene_indices	vector of gene index values
colors	color palette for ggplot2, default=palette of 11 colors

Value

generates plot of gene count distributions

Examples

gold_path <- system.file("testdata", package = "countland", mustWork = TRUE)
gold.data <- Seurat::Read10X(data.dir = gold_path)
C <- countland(gold.data)
PlotGeneCounts(C,gene_indices=1:10)

countland documentation built on May 29, 2024, 7:13 a.m.